Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1380
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.6  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   7.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   7.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   7.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 553 DVNKAVTGNNIFEEIRNIH 497
           DVN  + G N+ E IRN H
Sbjct: 395 DVNFRILGANVKELIRNTH 413


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 624 WLPESIDVNDVNAAIH 671
           W+P++   ND N+ +H
Sbjct: 117 WVPDTFFANDKNSFLH 132


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 252 NQYPKIYFNIDRLPYVAI 199
           N Y K+Y+NI+ +  + I
Sbjct: 102 NNYKKLYYNINYIEQIPI 119


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 252 NQYPKIYFNIDRLPYVAI 199
           N Y K+Y+NI+ +  + I
Sbjct: 102 NNYKKLYYNINYIEQIPI 119


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 252 NQYPKIYFNIDRLPYVAI 199
           N Y K+Y+NI+ +  + I
Sbjct: 104 NNYKKLYYNINYIEQIPI 121


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 252 NQYPKIYFNIDRLPYVAI 199
           N Y K+Y+NI+ +  V +
Sbjct: 102 NNYKKLYYNINYIEQVPV 119


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 252 NQYPKIYFNIDRLPYVAI 199
           N Y K+Y+NI+ +  + I
Sbjct: 321 NNYKKLYYNINYIEQIPI 338


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 25  SFTRWTLRSFTKL*KHRSDIRVFELALVDEQFTI 126
           SF R T ++F       +D+R  ELA+  E FT+
Sbjct: 223 SFHRLTSKTFD------NDLRYSELAVAGESFTV 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,002
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)