Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1380
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23685.1 68416.m02978 F-box family protein contains TIGR01640...    30   2.0  
At1g01770.1 68414.m00096 expressed protein                             29   3.6  
At3g25090.1 68416.m03134 F-box family protein-related contains T...    29   4.7  

>At3g23685.1 68416.m02978 F-box family protein contains TIGR01640:
           F-box protein interaction domain
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 474 DDQRFCILSFYSQFTFIARPRYCHTSISFKQFHYSIDDM-T*RCC 343
           DD RF + + Y + T    PRY H    + +F Y++  + T  CC
Sbjct: 67  DDSRFVVCNPYLEQTRWIEPRYSHRPHGWDRFSYALGYVNTDSCC 111


>At1g01770.1 68414.m00096 expressed protein
          Length = 632

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 519 KILLPVTALFTSHVHIIILLFFSFTSMDDRPLDVKWLPESIDVNDVNA 662
           ++ L +T  +  HV  ++L   SF  +D +P+D     E  DV  ++A
Sbjct: 547 RLKLIITPQWVKHVMSVLLSTSSFLELDAKPMDENVSVEIYDVEGIHA 594


>At3g25090.1 68416.m03134 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 325

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 474 DDQRFCILSFYSQFTFIARPRYCHTSISFKQFHYSI 367
           DD RF + + Y + T    PRY H      +F Y++
Sbjct: 69  DDSRFVVCNPYLEQTRWIEPRYSHRPYGMDRFSYAL 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,341
Number of Sequences: 28952
Number of extensions: 305295
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)