Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1379
         (771 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O76874 Cluster: CG3777-PA, isoform A; n=10; melanogaste...    43   0.010
UniRef50_UPI000051A03C Cluster: PREDICTED: similar to CG3777-PB,...    40   0.068
UniRef50_UPI000058469B Cluster: PREDICTED: hypothetical protein;...    37   0.64 
UniRef50_A2WGJ7 Cluster: Methionine synthase II; n=1; Burkholder...    35   2.6  
UniRef50_UPI00015B46F2 Cluster: PREDICTED: hypothetical protein;...    33   5.9  
UniRef50_A6GTZ3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_Q82QW4 Cluster: Putative phage tail sheath protein; n=1...    33   7.9  

>UniRef50_O76874 Cluster: CG3777-PA, isoform A; n=10; melanogaster
           subgroup|Rep: CG3777-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 879

 Score = 42.7 bits (96), Expect = 0.010
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = +3

Query: 291 LLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNFEPAGTEQKQHSRIQIKKGPNGQ 470
           LL T  P T  K  D +  + D + D +   +  N   E AG+E  + SRI+IKKGPNGQ
Sbjct: 146 LLLTTLP-TAGKKLDNL--DEDIVLDPHEDFINQNFALESAGSENSKKSRIEIKKGPNGQ 202


>UniRef50_UPI000051A03C Cluster: PREDICTED: similar to CG3777-PB,
           isoform B; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG3777-PB, isoform B - Apis mellifera
          Length = 1134

 Score = 39.9 bits (89), Expect = 0.068
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = +3

Query: 270 YKHRQKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSN------VNFEPAGTEQKQ 431
           Y     P+LTT     ++++FD++P+N    D   +     N      V+  PAGT    
Sbjct: 328 YPTTMMPVLTT---PREARSFDFVPVNIIHDDGKETSFRERNFGDFSDVSLIPAGT---- 380

Query: 432 HSRIQIKKGPNGQ 470
           +SRIQ+KKGPNG+
Sbjct: 381 NSRIQVKKGPNGK 393


>UniRef50_UPI000058469B Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 298

 Score = 36.7 bits (81), Expect = 0.64
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +3

Query: 6   TPLRQQPDRAGRRARTHHS*YPHDLTSQQRHDRVARRRPMFTGVHVPM 149
           TP R +PDR GR ++  H+   HDLTS+      A R   F G H P+
Sbjct: 214 TPTRPRPDRPGRGSKGMHNIMMHDLTSEPNR---AVRDARFPGQHRPL 258


>UniRef50_A2WGJ7 Cluster: Methionine synthase II; n=1; Burkholderia
           dolosa AUO158|Rep: Methionine synthase II - Burkholderia
           dolosa AUO158
          Length = 717

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +3

Query: 15  RQQPDRAGRRARTHHS*YPHDLTSQQRHDRVARR 116
           R  PDR  RRAR H   + H L   QRH RV RR
Sbjct: 649 RVVPDRRERRARRHADPHAHVLFGVQRHHRVDRR 682


>UniRef50_UPI00015B46F2 Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 1028

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
 Frame = +3

Query: 288 PLLTTVAPATDSKNFDYIPINF-------DSIDDINSGLLT--SNVNFEPAGTEQKQHSR 440
           P+LTT     D++ +D++P+N        + +   N+  L   S+ +  PAG+    ++R
Sbjct: 175 PILTT---PRDARPYDFVPVNIIHQDTKVNPLSPFNNKNLKDLSDTSLIPAGS----NTR 227

Query: 441 IQIKKGPNGQ 470
           IQ+KKGPNG+
Sbjct: 228 IQVKKGPNGK 237


>UniRef50_A6GTZ3 Cluster: Putative uncharacterized protein; n=1;
           Limnobacter sp. MED105|Rep: Putative uncharacterized
           protein - Limnobacter sp. MED105
          Length = 418

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 145 QWASAD--VELITKP---RPGEEYVIVSSGQQPAPVKASAKQKTKYLISTDKNRCSL 300
           QWA+     + I K    R G+E VI   G  PA V+ S K  T  L + D NR SL
Sbjct: 254 QWANGQRSTDQIAKEPQARFGQEQVISEKGLNPAAVEQSVKLVTAQLAALDNNRISL 310


>UniRef50_Q82QW4 Cluster: Putative phage tail sheath protein; n=1;
           Streptomyces avermitilis|Rep: Putative phage tail sheath
           protein - Streptomyces avermitilis
          Length = 504

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 363 DDINSGLLTSNVNFEPAGTEQKQHSRIQIKK 455
           DDIN G++T +V F+P    +  H RIQ K+
Sbjct: 466 DDINDGIVTIDVGFQPLSPAEFVHIRIQQKR 496


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,333,906
Number of Sequences: 1657284
Number of extensions: 12993885
Number of successful extensions: 37040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37009
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)