Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1379
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    29   0.97 
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   6.9  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   9.1  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   9.1  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 339 IPINFDSIDDINSGLLTSNVNFEPAGTEQKQHS 437
           +PI+  S+ D     LT+N  F+P  + Q  HS
Sbjct: 734 VPIDLSSMQDDQVSSLTTNEEFDPLSSFQASHS 766


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 208 VSSGQQPAPVKASAKQKTKYLISTD--KNRCSLP*HPQRTAK 327
           VS G  P P   ++K + K  ISTD  K   S P  P R+A+
Sbjct: 13  VSFGNLPRPEPRTSKDQQKLSISTDVKKPSHSAPVTPVRSAR 54


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 64  STRTTSRHNNDMTAWPAVALCLLVCTSQWASADVELITKPRPGEEYVIVSSGQQPAPVK 240
           S+++ S      +A PA    ++  + QW      +  +P+PG +  + + G++ AP+K
Sbjct: 3   SSKSPSEVEKSSSASPAPQKPMIRVSKQWV-----VPPRPKPGRKPALDALGRRKAPIK 56


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 327 NFDYIPINFDSIDDINS 377
           NF YIP+  + +D+INS
Sbjct: 279 NFKYIPLTKEDMDEINS 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,303
Number of Sequences: 5004
Number of extensions: 51349
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)