Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1379
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0197 + 1623454-1624566                                           29   3.1  
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635...    29   4.1  
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566...    29   5.4  
01_07_0318 + 42703176-42703473,42703563-42704290                       29   5.4  
07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286...    28   7.2  
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    28   7.2  
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    28   9.5  

>08_01_0197 + 1623454-1624566
          Length = 370

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 148 WASADVELITKPRPGEEYVIVSSGQQPAPVKASAKQKT 261
           WA  DV LI + +PG+   + +    P P ++S+ Q++
Sbjct: 80  WALVDVNLINQLQPGQPRQLFTKTDVPTPFRSSSFQES 117


>09_04_0627 -
           19061106-19061474,19062067-19062909,19063395-19063501,
           19064301-19064332,19064384-19064663,19065092-19065475,
           19066730-19066803,19067244-19067310,19067415-19067486,
           19067941-19068000,19068683-19068734,19068874-19068943,
           19069110-19069372
          Length = 890

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 96  HDRVARRRPMFTGVHVPMGVR*CGTDHKTTTGRRICYCQFGSTARSSQG 242
           H R  RR P   G+ +P+G+  C  D      RR CY  F   A +S G
Sbjct: 375 HPRAKRRSPTPPGL-IPVGLPTCNPDLIEVEDRRCCYHGFAG-ADASHG 421


>09_03_0044 -
           11855569-11855664,11855775-11855891,11856572-11856682,
           11856768-11856874,11857182-11857221,11857328-11857408,
           11857578-11857631,11857800-11857860,11857984-11858029,
           11858276-11858352,11858448-11858563,11858654-11858890
          Length = 380

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -3

Query: 769 DWXRSMLRTNVRDPWLTAARTSFLCLWSCRSGCCS---RPIYRCVFCFTFVSDVVVCVGF 599
           D+  S+         +T +      +W CRSG C+   RP+   +F  ++VS V +    
Sbjct: 211 DYLHSIAVREANRQVVTGSEDGTARIWDCRSGKCTQVIRPVKNKIFEGSWVSCVAIDASE 270

Query: 598 KW 593
            W
Sbjct: 271 SW 272


>01_07_0318 + 42703176-42703473,42703563-42704290
          Length = 341

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 736 RDPWLTAARTSFL-CLWSCRSGCCSRPIYRCVFCFTF 629
           RD  +T   T    C+ SC S C ++ +  C +C TF
Sbjct: 62  RDYQVTCTNTGRRPCVVSCPSNCPNKCLVACAYCLTF 98


>07_01_0383 -
           2856777-2858042,2858238-2858270,2858607-2858742,
           2860778-2860890
          Length = 515

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 614 CLCRI*VDRHENCELEARKW 555
           CL R+ V+ HE C L  R+W
Sbjct: 174 CLLRLPVETHEACRLVCRRW 193


>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 218 PELTITYSSPGRGFVISSTSADAHWDVHTSKHRAT 114
           P+  +  + PG G V+S+ ++D  + +HTS  R T
Sbjct: 157 PDSFLAATRPGGGRVLSTATSDLTFAIHTSPFRFT 191


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 145 QWASADVELITKPRPGEEYVIVSSGQQPAPVKASAKQKTKYLISTDKNR 291
           QW S +    ++   G+  +++ +G QPAP   +A     YL+   KN+
Sbjct: 143 QWLSRNPGFPSRDARGKPRILLVTGSQPAPCDDAAGD--HYLLKATKNK 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,856
Number of Sequences: 37544
Number of extensions: 363547
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)