Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1379
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     36   0.027
SB_18308| Best HMM Match : TIL (HMM E-Value=4)                         31   1.4  
SB_13610| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_53428| Best HMM Match : Extensin_2 (HMM E-Value=2.4)                28   9.6  

>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 760 RSMLRTNVRDPWLTAARTSFLCLWSCR-SGCCSRPIYRCVFCFTFVSDVVVCVGFKWTV 587
           R ML +N  +P++   R  F+C   CR S CC    +  V      SD+ VCV  +WTV
Sbjct: 753 RRMLLSNENEPYVVCHR--FIC--QCRMSLCCVTTCHMSVSYVIVSSDLSVCVSIQWTV 807


>SB_18308| Best HMM Match : TIL (HMM E-Value=4)
          Length = 146

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 112 AVALCLLVCTSQWASADVELITKPRPGEEYVIVSSGQQPAPVKASAKQKTKYLISTDKNR 291
           AV LC+ +C + W   +  +  + R   +Y   +S  Q    K  AK+K + L   D+  
Sbjct: 73  AVVLCIQLCNASWLD-ERAMTQEKRCNGKYQKCTSNSQCCDQKDYAKRKLRCLTQCDEGG 131

Query: 292 C 294
           C
Sbjct: 132 C 132


>SB_13610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 287 FLSVLIRYFVFCLADALTGAGC 222
           FL VL+   +FC ++AL G GC
Sbjct: 8   FLCVLVAVALFCESEALNGVGC 29


>SB_53428| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
          Length = 448

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 745 TNVRDPWLTAARTSFLCLWSCRSGCCSRPIY 653
           T V  PW+T  R+S      C    CSR +Y
Sbjct: 224 TTVIKPWITRYRSSNRLFCICSRTACSRTVY 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,959,372
Number of Sequences: 59808
Number of extensions: 420974
Number of successful extensions: 1141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)