Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1379
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56965-8|AAB52663.1| 314|Caenorhabditis elegans Hypothetical pr... 29 2.8
U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81033-2|CAB02725.1| 263|Caenorhabditis elegans Hypothetical pr... 29 4.8
AJ011777-1|CAA09770.1| 263|Caenorhabditis elegans FOG-3 protein... 29 4.8
AY008133-1|AAG32086.1| 363|Caenorhabditis elegans heterotrimeri... 28 6.4
AF077536-9|AAK31414.1| 363|Caenorhabditis elegans G protein, al... 28 6.4
AF068709-7|AAO26014.1| 317|Caenorhabditis elegans Serpentine re... 28 6.4
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z68119-3|CAA92194.1| 131|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U56965-8|AAB52663.1| 314|Caenorhabditis elegans Hypothetical
protein C15H9.3 protein.
Length = 314
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -3
Query: 454 FLIWILECCFCSVPAGSKLTFDV-----NRPLFISSI 359
FL+ L C+V GS+L FDV NRPLF S+
Sbjct: 37 FLLLSLHFVACTVDVGSRLVFDVPSEILNRPLFRLSV 73
>U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical
protein R13A1.10 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 682 RSGCCSRPIYRCVFCFTFVSDVVVCVGFK 596
RS C + + R +FC TF+ D V+C FK
Sbjct: 11 RSNC--QDVARKIFCETFLKDNVICNSFK 37
>Z81033-2|CAB02725.1| 263|Caenorhabditis elegans Hypothetical
protein C03C11.2 protein.
Length = 263
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 282 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGL 383
+KPLLT A + N Y P+ + DDIN+ L
Sbjct: 153 KKPLLTNDKAALEMVNTMYSPLAREKCDDINANL 186
>AJ011777-1|CAA09770.1| 263|Caenorhabditis elegans FOG-3 protein
protein.
Length = 263
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 282 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGL 383
+KPLLT A + N Y P+ + DDIN+ L
Sbjct: 153 KKPLLTNDKAALEMVNTMYSPLAREKCDDINANL 186
>AY008133-1|AAG32086.1| 363|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 282 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNF 404
+KPL T + ATD++N D + FDS D+ + V F
Sbjct: 325 EKPLYTHITNATDTRNIDRV---FDSCMDVIFKISMEKVGF 362
>AF077536-9|AAK31414.1| 363|Caenorhabditis elegans G protein, alpha
subunit protein 11 protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 282 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNF 404
+KPL T + ATD++N D + FDS D+ + V F
Sbjct: 325 EKPLYTHITNATDTRNIDRV---FDSCMDVIFKISMEKVGF 362
>AF068709-7|AAO26014.1| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 60 protein.
Length = 317
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 267 VFCFLFSGCLDWSGLLTRTDNNIFF 193
++CFL++G L WS ++T D+N F
Sbjct: 235 IYCFLYTGILMWS-VITSIDSNFPF 258
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
protein F40F11.2b protein.
Length = 1607
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 327 NFDYIPINFDSIDDINSGLLTSNVNFEPAGTEQKQHSRIQIKKGPNG 467
N+D+ N D+I + G L+ + +F+ AGT ++ S ++ PNG
Sbjct: 27 NYDFESGNIDNIPLNDDGPLSPSQDFDLAGTLEEYES-YDLRLSPNG 72
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 667 NNNHYGSSRDTKTKSWPPSTRGRGRWSVTY 756
NNN+Y + + SW PS + + +++ Y
Sbjct: 10 NNNYYSHGQSSGNDSWAPSAQSQEQYNPVY 39
>Z68119-3|CAA92194.1| 131|Caenorhabditis elegans Hypothetical
protein T18D3.5 protein.
Length = 131
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 58 TPSTRTTSRHNNDMTAWPAVALCLLVCTSQWASADVELITKPRPGEEYVIVSSGQQPAPV 237
+P SR N+D+ W V LCLL C + D + GE +V+ G+
Sbjct: 30 SPRENEASRDNSDV--WLVVILCLLFCFALRHMNDFYV------GESVTLVAEGE--FSH 79
Query: 238 KASAKQKTKYLISTDKN 288
+ S KQ K+L +K+
Sbjct: 80 RFSRKQTNKHLERVEKD 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,151
Number of Sequences: 27780
Number of extensions: 312969
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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