Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1379
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 282 QKPLLTTVAPATDSKNFDYIPINFD 356
           + P++  V  ATD+ NFD  P + D
Sbjct: 640 EPPIMPRVQNATDTTNFDEYPPDSD 664


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 285 FVCAYKVFCFLFSGCLDW 232
           F+C Y+  CF    C D+
Sbjct: 735 FLCRYEAHCFALCHCCDF 752


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 710 DFVFVSLELP*WLLFETYLPLCIL 639
           + VFV      + LF TY+P C++
Sbjct: 235 EVVFVLKRRLGYYLFHTYIPTCLI 258


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +3

Query: 657  IGLEQQPLRQLQRHKNEVLAAV----NQGSRTLVRNIL 758
            + ++Q P +Q Q+ + ++LA V    N G    V N+L
Sbjct: 1096 VQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISVENLL 1133


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 97  MTAWPAVALCLLVCTS 144
           +T W AV +   +CTS
Sbjct: 132 ITGWSAVVITAAICTS 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,497
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)