Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1379
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    29   3.4  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    29   4.5  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    28   5.9  
At2g27900.1 68415.m03382 expressed protein                             28   5.9  
At4g17410.1 68417.m02607 expressed protein                             28   7.9  

>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 551 STTSEPLVHNSHDGPL 598
           +TTSEPLVH SH  PL
Sbjct: 516 ATTSEPLVHESHRHPL 531


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 551 STTSEPLVHNSHDGPL 598
           +TTSEPLVH SH  PL
Sbjct: 521 ATTSEPLVHESHMHPL 536


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 191  AKNMLLSVRVNSPLQSRHPLNRKQNTL*AQTKTVAHYRSTRNGQQKL 331
            AK +L+  +   P+Q+  PL++ QN +   T TV+  +   NG+ K+
Sbjct: 1323 AKGLLVRPQGGVPVQAMPPLSQLQNMI--NTATVSSEKGGENGEAKV 1367


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 46  RALTTPSTRTTSRH---NNDMTAWPAVALCLLVCTSQWA 153
           R+ T   +RT+S H   N+D+TA    +LCLL    ++A
Sbjct: 744 RSFTRSQSRTSSSHFSTNDDLTAQTGSSLCLLRSMDKYA 782


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 79  SRHNNDMTAWPAVALCLLVCTSQWASADVELITKPRPGEEYVIVSSGQQPAPVKASAKQK 258
           S +N   T  P++ +  +  TS WASA++  + KP      +  SS  + A V     Q 
Sbjct: 315 SNNNETSTLKPSIEIAEI--TSAWASAEIVKVEKPVDASANIQGSSNGKEAAVSQLNTQP 372

Query: 259 TK 264
            K
Sbjct: 373 PK 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,130
Number of Sequences: 28952
Number of extensions: 282953
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)