Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1378
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    74   1e-14
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    29   0.44 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   1.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.8  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   2.3  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   3.1  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    24   9.5  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 33/54 (61%), Positives = 41/54 (75%)
 Frame = +3

Query: 288 DFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNTDLIVLKN 449
           +F  AA+ EKR RHDVMAH++T G   P A+ IIHLGATSC+V DN DLI L++
Sbjct: 70  EFEIAAKEEKRQRHDVMAHIYTYGLAAPAASGIIHLGATSCFVTDNADLIFLRS 123



 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 25/47 (53%), Positives = 36/47 (76%)
 Frame = +1

Query: 97  EYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGL 237
           +Y +Y +PL+ RYAS EM + FS + + +TWR+LW+ LA AEK+LGL
Sbjct: 3   DYGSYSTPLTARYASAEMSHLFSREMRINTWRQLWLNLAIAEKQLGL 49


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 366 TSRRACGHAPSRRDEPASRAQPPPGSXXXXXXXXXXXLSGAYVQSELLFSFSQI 205
           +SRR C  AP R   PAS+ QP P S            +   ++   LF+ SQ+
Sbjct: 188 SSRRVCNIAPERF-VPASQLQPAPLSPAMDIFSLGCVFAELLLEESPLFTLSQL 240


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = -2

Query: 148 FLWRHIVYSKVTGNYSIRYFAIQQGRQLWSFYRIYFTN------FTLKSYK 14
           FL  ++ Y  ++  +SI Y +   G  +W+ +R+ F+N      FTL +YK
Sbjct: 664 FLDTYLWYMLISTMFSIAY-SFYMGSAIWTPWRVIFSNLPRRIYFTLLAYK 713


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 288 DFPAAAEHEKRVRHDVMAHVHTLGERCPLAAP 383
           D+ ++A HE+RV H   +  H  G   PL  P
Sbjct: 61  DYKSSA-HEQRVNHTTDSMAHVPGNNSPLQTP 91


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 350 HARREVSPRRAHHTPGSHVVLRRRQHRFD 436
           H R +      +H  G+H+ LR R  R+D
Sbjct: 160 HTRHDSKTLGLNHNQGAHIELRLRTDRYD 188


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 249 GAYVQSELLFSFSQINPEFTPSRKFLLVTEIVL 151
           GAY +  +     + N ++TP+RK+LLV  I+L
Sbjct: 99  GAYDRLTMWEQLDEGN-QYTPARKYLLVLPIIL 130


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 127 YSKVTGNYSIRYFAIQQGRQLWSFYRIYFTNFTLKSYK 14
           Y K   +  +    I+  + ++++  ++FTN ++KS+K
Sbjct: 177 YKKQKPSGQLTSMQIELAKAMFNYQDVFFTNMSMKSHK 214


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 365 VSPRRAHHTPGSHVVLRRRQHRFD 436
           V+ +R HH+ G+H + R R +  D
Sbjct: 4   VARKRKHHSNGNHALFRTRVYGRD 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,276
Number of Sequences: 5004
Number of extensions: 37224
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)