Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1378
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 29 1.7
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420... 29 1.7
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 29 2.3
01_01_1191 + 9487835-9488467,9492584-9492787 28 4.0
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 27 5.3
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 7.1
07_03_1163 - 24439976-24440023,24440562-24440597,24440932-244410... 27 7.1
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 7.1
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78... 27 7.1
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 27 7.1
06_03_0789 + 24630552-24631171,24631240-24631279,24632422-246324... 27 9.3
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 381 ARRGDTSRRACGHAPSRRDEPASRA 307
ARRGD + G A RRDE AS A
Sbjct: 211 ARRGDAAEAELGEALERRDEAASTA 235
>01_03_0012 +
11638363-11638476,11638854-11640678,11641855-11642096,
11642198-11642327,11642464-11642774
Length = 873
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 136 HIVYSKVTGNYSIRYFAIQQGRQLWSFYRI 47
H+V+ +V N S+RYF + RQ+ Y I
Sbjct: 42 HVVFQRVENNCSLRYFTENEIRQITRGYSI 71
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 399 LPGV*WARRGDTSRRACGHAPSRRDEPASR--AQPPP 295
+PGV W+R SR+ +R DEP S A PPP
Sbjct: 278 VPGVVWSRSSAPSRQRQRQRRTRWDEPPSPAVATPPP 314
>01_01_1191 + 9487835-9488467,9492584-9492787
Length = 278
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 160 NCTAFLWRHIVYSKVTGNYSIRYFAI 83
+C A LWRH Y +V + + RY A+
Sbjct: 43 DCVASLWRHRTYDRVRLHLAKRYCAL 68
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 397 PRCMMGAARGHLSPSVWTCAITS*RTRFSCSAAAGKSMSCTA-ASSSAIERRLCPIRAP 224
PR +A +P WT ++T+ R F S A+ S + A A+ A+ IRAP
Sbjct: 622 PRAPSASAPPAAAPREWTVSLTTGRYSFGDSGASSSSAAPRAPAAPLALHAPAPHIRAP 680
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 220 QL*PNKSRVYAKSKISFGH*NCTAFLWRHIVYSKVTGNYSIRY 92
Q+ P+K R+ + K+ + N +LW +V S +T RY
Sbjct: 1580 QIFPSKIRILSSFKVIIHYFNARKYLWEELV-SPITAYMFFRY 1621
>07_03_1163 -
24439976-24440023,24440562-24440597,24440932-24441018,
24441349-24441492,24441782-24441916,24442215-24442279,
24442395-24442477,24442607-24442642,24443343-24443449,
24443558-24443658,24443750-24443909
Length = 333
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -2
Query: 211 PNKSRVYAKSKISF-GH*NC-TAFLW--RHIVYSKVTGNYSIRYFAIQQGRQLWS 59
P +S + +F GH C +A W R +YS + ++S+R + +Q G++ W+
Sbjct: 223 PEESLFEGSATSTFLGHTQCVSAVTWPERQTIYS-ASWDHSVRQWDVQTGKETWN 276
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 163 SDQKKFSTWRKLWIYLAKAEKELGLDI 243
+D KF+ W+ +W Y E EL L +
Sbjct: 452 NDDDKFNDWQAVWAYAIGPEPELVLSL 478
>02_01_0106 -
780984-781279,781355-781578,781684-781920,782023-782126
Length = 286
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 110 TGHL*VHDMPPKKCSTISV 166
TG L HD PP++C IS+
Sbjct: 268 TGPLVEHDFPPERCRVISI 286
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 136 HIVYSKVTGNYSIRYFAIQQGRQLWSFYRI 47
H+V +V NYS+RYF + + + Y I
Sbjct: 128 HVVLQRVDNNYSLRYFTKNEVWHITNGYSI 157
>06_03_0789 +
24630552-24631171,24631240-24631279,24632422-24632486,
24632615-24632660,24633222-24633314,24633736-24633855,
24633931-24633982,24634051-24634123,24634350-24634416,
24634670-24634720,24635026-24635118,24635207-24635308
Length = 473
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 137 PPKKCSTISVTKRNF 181
PPK C+T+S T RNF
Sbjct: 240 PPKTCTTVSWTFRNF 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,893
Number of Sequences: 37544
Number of extensions: 262750
Number of successful extensions: 953
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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