Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1378
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 6e-20
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 28 3.1
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_38884| Best HMM Match : SpoA (HMM E-Value=1.5) 27 5.5
SB_57478| Best HMM Match : TPR_1 (HMM E-Value=0) 27 7.3
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39) 27 7.3
SB_12255| Best HMM Match : Pkinase (HMM E-Value=0) 27 7.3
SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0) 27 9.6
SB_38793| Best HMM Match : RepA_N (HMM E-Value=3.4) 27 9.6
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 27 9.6
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05) 27 9.6
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 27 9.6
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 27 9.6
SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089) 27 9.6
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.6
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 27 9.6
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 27 9.6
SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14) 27 9.6
SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014) 27 9.6
>SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 93.9 bits (223), Expect = 6e-20
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +3
Query: 255 IAELEAAVHDIDFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNT 428
IAE+EA + +ID+ AAE E++ RHDVMAHVHT G CP AAPIIHLGATSCYVGDNT
Sbjct: 61 IAEMEANLENIDYDLAAEEERKRRHDVMAHVHTFGVCCPKAAPIIHLGATSCYVGDNT 118
Score = 88.2 bits (209), Expect = 3e-18
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = +1
Query: 100 YCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLDISAAQ 255
Y YRSPL++RYASKEM Y FS+ KKFSTWR+LW+YLAKAEKELG +ISA Q
Sbjct: 9 YSKYRSPLTSRYASKEMAYCFSEDKKFSTWRRLWLYLAKAEKELGQNISAEQ 60
>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 357 RACGHAPSRRDEPASRAQPP 298
RAC H+P+RR+ RA+PP
Sbjct: 729 RACKHSPARRECECIRAEPP 748
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 366 TSRRACGHAPSRRDEPASRAQPPPGS 289
+S R APS +P S++QP PGS
Sbjct: 1102 SSNRGAYSAPSSPSQPRSQSQPEPGS 1127
>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 91 NTEYCNYRSPLSTRYASKEMQYNFSDQKKFST 186
NTEY Y + +T Y ++ ++YN +++T
Sbjct: 130 NTEYTEYNTEYNTEYNTEYIEYNTEYNTEYNT 161
>SB_38884| Best HMM Match : SpoA (HMM E-Value=1.5)
Length = 399
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 310 CSAAAGKSMSCTAASSSAIERRLCPIR 230
C+AAAG + AA+ SA+ RR C +R
Sbjct: 220 CAAAAGGPGAERAAAGSALARRRCRLR 246
>SB_57478| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 360
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 354 LGERCPLAAPIIHLGATSCYVGDNTDLIV 440
LGE C LA ++G C +GDN+ ++
Sbjct: 214 LGEECRLARVYNNIGLVFCSLGDNSQAMM 242
>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
Length = 1037
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 310 CSAAAGKSMSCTAASSSAIERRLCPIR 230
C+AAAG + AA+ +A+ RR C +R
Sbjct: 808 CAAAAGNPGAERAAAGTALARRRCRLR 834
>SB_12255| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 476
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 16 YKTLT*NL*NKFDKMTTIDAPVELQNTEYCNYRSPLS-TRYASK-EMQYNFSDQKKFSTW 189
+ T+T + + DKM T+DAP + E + ++ R ASK Q K+F+
Sbjct: 241 WDTVTADAKDLIDKMLTVDAPKRITAAEALKHPWIVNRERIASKVHRQQTLDGLKRFNAR 300
Query: 190 RKL 198
RKL
Sbjct: 301 RKL 303
>SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 398
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 354 LGERCPLAAPIIHLGATSCYVGDNTDLIV 440
LGE C A ++GA C +GDN+ ++
Sbjct: 305 LGEECRQARVYNNIGAVFCSLGDNSQAMM 333
>SB_38793| Best HMM Match : RepA_N (HMM E-Value=3.4)
Length = 465
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 147 VDMKRDLLEFSSVYFTNFTVRS 168
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 445 VDMKRDLLEFSSVYFTNFTVRS 466
>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 91 NTEYCNYRSPLSTRYASKEMQYNFSDQKKFST 186
NT+Y Y + +T Y ++ +YN +++T
Sbjct: 58 NTDYTEYNTEYNTEYNTEHTEYNTEYNTEYNT 89
>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 696
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 449 VDMKRDLLEFSSVYFTNFTVRS 470
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 449 VDMKRDLLEFSSVYFTNFTVRS 470
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 344 CPHARREVSPRRAHHTPGSHVVLRRRQHRFD 436
CP RE R + H P + + L R+QH+FD
Sbjct: 149 CPIKNRE---RESEHVPLTTMSLPRQQHQFD 176
>SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)
Length = 723
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 74 VDMKRDLLEFSSVYFTNFTVRS 95
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 431 VDMKRDLLEFSSVYFTNFTVRS 452
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 310 CSAAAGKSMSCTAASSSAIERRLCPIR 230
C+AAAG S + A + +A+ RR C +R
Sbjct: 826 CAAAAGGSGAERATAGTALARRRCRLR 852
>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1342
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 409 HDVAPRCMMGAARGHLSPSVWTCAITS*RTRFSCSAAAGKSMSCTAASSSAIERRLCPIR 230
HD++ + AARG SV I S CSAA + C + S +E C IR
Sbjct: 117 HDISLTLLGSAARGKRDESVDGLGIQSSSESSICSAATKEKHYCKKLTFS-LEEVNCKIR 175
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 1596 VDMKRDLLEFSSVYFTNFTVRS 1617
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 517 VDMKRDLLEFSSVYFTNFTVRS 538
>SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)
Length = 832
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 189 VDMKRDLLEFSSVYFTNFTVRS 210
>SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)
Length = 413
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 85 IQQGRQLWSFYRIYFTNFTLKS 20
+ R L F +YFTNFT++S
Sbjct: 365 VDMKRDLLEFSSVYFTNFTVRS 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,485
Number of Sequences: 59808
Number of extensions: 287516
Number of successful extensions: 782
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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