Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1378
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    73   7e-14
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    73   7e-14
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 32/66 (48%), Positives = 45/66 (68%)
 Frame = +3

Query: 252 SIAELEAAVHDIDFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNTD 431
           +I E+++     D+P     E++++HDVMAH H  G+ CP AA IIHLGATSC+V DN D
Sbjct: 57  AIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNAD 116

Query: 432 LIVLKN 449
           LI  ++
Sbjct: 117 LIAYRD 122



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL 237
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGL 50


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 32/66 (48%), Positives = 45/66 (68%)
 Frame = +3

Query: 252 SIAELEAAVHDIDFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNTD 431
           +I E+++     D+P     E++++HDVMAH H  G+ CP AA IIHLGATSC+V DN D
Sbjct: 57  AIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNAD 116

Query: 432 LIVLKN 449
           LI  ++
Sbjct: 117 LIAYRD 122



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL 237
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGL 50


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 350 HARREVSPRRAHHTPGSHVVLRRRQH 427
           H+   +SP RAHH P   V + RR H
Sbjct: 106 HSCHSMSPLRAHHCPVCDVCILRRDH 131


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/59 (33%), Positives = 35/59 (59%)
 Frame = -1

Query: 200 QSLRQVENFFWSLKLYCISLEAYRVLKGDR*LQYSVFCNSTGASIVVILSNLFHKFYVK 24
           Q +++++NF  S K   IS+ + + LKG+   +++V    TGA+I+V +  L H   VK
Sbjct: 389 QKMQELKNFLHSSKNK-ISMASLK-LKGNSHWKHAVDLVLTGANILVSIQRLQHFLRVK 445


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 148 MQYNFS--DQKKFSTWRKLWIYLAKAEKELGLDISAA 252
           M YN S  D ++ +TW+K W   A+ EK    ++S++
Sbjct: 1   MDYNLSTDDFEECATWQKYWNLTAELEKNKDRNLSSS 37


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 152 CISLEAYRVLKGDR*LQYSVFCNSTGASIVVILSNLFHK 36
           C+  +A RV + D   +YSV CN T   ++ + + + +K
Sbjct: 123 CLQCQA-RVTEADLYPKYSVVCNKTSTLVIFVHNGITNK 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,818
Number of Sequences: 27780
Number of extensions: 217585
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)