Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1378
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.3  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 124 SKVTGNYSIRYFAIQQGRQLWSFYRIY 44
           S ++ +YS R   I++G+ +W +   Y
Sbjct: 299 SIMSRHYSTRAIVIEKGQSIWDYDSTY 325


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -2

Query: 133 IVYSKVTGNYSIRY----FAIQQGRQLWSFYRIYFTNFTL 26
           ++++   GNY +RY         G  LW    IY ++ T+
Sbjct: 114 VLFNNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTI 153


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 260 RTRSCRTRHRL 292
           +T  CRT+HRL
Sbjct: 177 KTYQCRTKHRL 187


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 116 HL*VHDMPPKKCSTISVTKRNF 181
           HL +HD PP     + +  R+F
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHF 154


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 136 ASKEMQYNFSDQKKFSTWRKLWIYLAKAEKE 228
           A   + Y      ++   RK W+YL +A  E
Sbjct: 709 ALDRLHYETDPCVRYYPRRKEWLYLHRARSE 739


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 116 HL*VHDMPPKKCSTISVTKRNF 181
           HL +HD PP     + +  R+F
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHF 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,151
Number of Sequences: 438
Number of extensions: 2705
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)