Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1378
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar...    28   2.6  
At2g13550.1 68415.m01494 expressed protein                             27   4.5  
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi...    27   4.5  
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    27   7.8  

>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
           diacylglycerol kinase, theta (diglyceride kinase, DGK-
           theta, DAG kinase theta). [Homo sapiens]
           SWISS-PROT:P52824
          Length = 712

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 373 RGHLSPSVWTCAITS*RTRFSCSAAAGKSMSCTAASSS 260
           +  LS  V  CA+      F CS++A K   C A + S
Sbjct: 104 KASLSIPVHRCAVCGVAAHFYCSSSAAKDCKCVAQAGS 141


>At2g13550.1 68415.m01494 expressed protein 
          Length = 181

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 356 RREVSPRRA-HHTPGSHVVLRRRQHR 430
           RRE+ PR   HH P +H+ ++ R+ +
Sbjct: 139 RREIGPRTPQHHQPYNHITIKTRRKK 164


>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Chain A, Human Mrf-2 Domain
           [Homo sapiens] GI:14278238; contains Pfam profile
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 398

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 137 PPKKCSTISVTKRNF 181
           PPK C+T+S T RNF
Sbjct: 170 PPKTCTTVSYTFRNF 184


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 22/73 (30%), Positives = 29/73 (39%)
 Frame = -2

Query: 382 GAARGHLSPSVWTCAITS*RTRFSCSAAAGKSMSCTAASSSAIERRLCPIRAPFQL*PNK 203
           GAA   +S S+ +C   + R    CS + G   SC   S S I    C  R      P  
Sbjct: 127 GAAGFEISRSI-SCNQLARRDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGN 185

Query: 202 SRVYAKSKISFGH 164
               + SK+S  H
Sbjct: 186 PCSCSVSKLSVHH 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,983,007
Number of Sequences: 28952
Number of extensions: 197281
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)