Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1377
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   2.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   5.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.0  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    25   9.3  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   9.3  

>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 63  ETSLSAXEKNLPXHFSVTRHFFPLRAICFXFMS 161
           E+  SA E  L   + +T+H  P  ++C+ F+S
Sbjct: 164 ESYSSASESPLKPKYRLTKHTQPCTSVCWNFLS 196


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +2

Query: 221 YDNKILLFKLYQFNFFVFMSMIIKSFCLXXXXXXXXXPISRKLHVDHFSK 370
           Y  KI+LF    FN F   S+  K +           P+ R  + D  S+
Sbjct: 416 YGTKIILFIFIAFNLFELCSIPFKHYAATSAAAARLIPLVRSQYPDFKSQ 465


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 215 HVYDNKILLFKLYQFNFFVFMSMIIKSFCL 304
           H  DN +L    Y+    + + +I  +FCL
Sbjct: 511 HSADNNLLFMNSYKMKLSIILGVIHMTFCL 540


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 90  NLPXHFSVTRHFFP 131
           N+P H SV  HF+P
Sbjct: 122 NVPLHISVISHFYP 135


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 517 CVVMSMASSNHLTTWAVSSSTHLSNNNKKKMCACT 413
           C V+     +   T  + S +     N K++CACT
Sbjct: 171 CFVLKCVDDSDSATMGIISRSAGLGQNTKQICACT 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,332
Number of Sequences: 5004
Number of extensions: 32278
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)