Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1377
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444...    29   1.8  
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    28   5.4  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    27   9.4  

>07_03_1083 -
           23840789-23841634,23841991-23842017,23844401-23844442,
           23844882-23845002,23845824-23846062
          Length = 424

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 395 FLRVYTSTRTHFFFIIIA*MCGRAHSPRG*VVTGGHRHH--NANAPS 529
           F+ +  + R    F++ A +  + HS    +++GGH HH   A APS
Sbjct: 171 FMHLVQNPRLPLRFVVQAMLVEQLHSHHSMLLSGGHHHHAGAAGAPS 217


>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 401 VRSETCLWPYFSKNDLH 351
           V   T LWPYF+ N++H
Sbjct: 372 VNFHTALWPYFAHNNIH 388


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 299 CLXXXXXXXXXPISRKLHVDHFSKNKAINKFHFLRVY 409
           CL         P S  LHVDH S+N  +N+ H   ++
Sbjct: 122 CLNFVGKASPPPESTVLHVDHLSRN--VNEDHLKEIF 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,374,419
Number of Sequences: 37544
Number of extensions: 180220
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)