Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1377
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     28   4.1  
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         27   9.5  

>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 478 TWAVSSSTHLSNNNKKKMC-----ACTSVHT*EVKLVYGLIFRKMI 356
           TW  S+ T L   N+KKM       C+S HT E+   Y L F+ +I
Sbjct: 16  TWKFSTYTVLGRQNRKKMIKADFQICSSWHT-EMYSYYSLFFKVVI 60


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 484 LTTWAVSSSTHLSNNNKKKMCACTSVHT*EVKLVYGLIFRKMIYMQLSRNWLNKVKLDK 308
           L TW     + +  +N  +MCA  S+      +     FRK+ Y++  R + N ++ ++
Sbjct: 196 LDTWRKGKKSIIRIHNNDEMCAARSIVVGIAHVTKDPDFRKLYYVRRERGFNNVLQTER 254


>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 ISRKLHVDHFSKNKAINKFH 394
           ISR+L V H   +K +NKFH
Sbjct: 358 ISRRLRVSHGCVSKILNKFH 377


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 ISRKLHVDHFSKNKAINKFH 394
           ISR+L V H   +K +NKFH
Sbjct: 316 ISRRLRVSHGCVSKILNKFH 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,992
Number of Sequences: 59808
Number of extensions: 227059
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)