Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1375
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical ...    30   1.6  
U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   8.3  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   8.3  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   8.3  

>AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical
           protein T22B2.5 protein.
          Length = 263

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 421 LKLRSYLCEYIQAIFFVFLVEIHTIQGLYYS 513
           + LRS   +Y + IF++F+V IH  Q +Y S
Sbjct: 121 INLRSKREKYFRVIFWIFIVFIHLCQAVYVS 151


>U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical
           protein F18E3.10 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 74  LFYHTNILFLQTCLINISVHI 136
           LFY TNI+FLQ C+I I  H+
Sbjct: 116 LFYLTNIVFLQGCMIFIFWHM 136


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 285 TLQVIRIAVILIFGTYIHSMMLVLFIIM*KCIVKDQLLFFCNKMN 151
           +LQV+  A++      +H  +LVLF+I+   I+  +L  FC K++
Sbjct: 206 SLQVVLNAILRAMIPLLHIALLVLFVILIYAIIGLEL--FCGKLH 248


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 285 TLQVIRIAVILIFGTYIHSMMLVLFIIM*KCIVKDQLLFFCNKMN 151
           +LQV+  A++      +H  +LVLF+I+   I+  +L  FC K++
Sbjct: 206 SLQVVLNAILRAMIPLLHIALLVLFVILIYAIIGLEL--FCGKLH 248


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 285 TLQVIRIAVILIFGTYIHSMMLVLFIIM*KCIVKDQLLFFCNKMN 151
           +LQV+  A++      +H  +LVLF+I+   I+  +L  FC K++
Sbjct: 206 SLQVVLNAILRAMIPLLHIALLVLFVILIYAIIGLEL--FCGKLH 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,904
Number of Sequences: 27780
Number of extensions: 320464
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)