Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1375
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identic...    31   1.1  
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr...    30   1.5  
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof...    30   1.9  

>At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identical
           to two-pore calcium channel (TPC1) [Arabidopsis
           thaliana] gi|14041819|dbj|BAB55460
          Length = 733

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 225 SYYVCRYRILILQQYELLVRYKVNGFYT*IRQVQVHKCFQHNNCEKRGHQ*KADSR 392
           +Y+V  Y I IL    L+V + +  F+T +   +  KC   ++ EKR  +  A S+
Sbjct: 650 TYFVSFYVITILLLLNLVVAFVLEAFFTELDLEEEEKCQGQDSQEKRNRRRSAGSK 705


>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 335

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 592 SRIVSTGVYPVNPKKQVSTIVKPFRFXGSGNLHVFWEY*NPGLXHNLG 735
           S +V++G   VNP +QV+T   P     +G     W+     L  NLG
Sbjct: 287 SEMVNSGYLHVNPMQQVNTSSDPLSCFNNGEAPSMWDSHVQNLYGNLG 334


>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
           profile: PF04283 protein of unknown function (DUF439)
          Length = 1197

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 589 MSRIVSTGVYPVNPKKQVSTIVKPFRFXGSGNLHVFWEY*NP 714
           + R VS G Y  NP   +ST+  P R   S  LH F ++ +P
Sbjct: 641 VKRAVSLGRYLQNPLAMISTLCGPGRDILSWKLHSFQDFLDP 682


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,260,501
Number of Sequences: 28952
Number of extensions: 266396
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)