Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1374
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 28 1.2
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 28 1.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.7
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 27 2.7
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 26 3.6
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 3.6
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 4.7
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.7
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 8.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.3
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 48 TGESIDSLCFIVTGSLEVIQDDEVVAILGEYVGIF 152
TGE I + CF S ++ +D VV+ L + + F
Sbjct: 236 TGEHISNTCFACRSSQLLVSEDNVVSSLNKLINDF 270
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2
Query: 199 GLIRSSRPSRRWTVTGNIPTYSPN---IATTSSSC 104
G++ SS +WT + N+P Y P+ + +TSS+C
Sbjct: 447 GVLSSSDSVPQWTSSYNLPGYPPDATAMGSTSSAC 481
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 175 KVSKSELTHRHSPLRRSG 228
KV KSE+TH++ LR++G
Sbjct: 353 KVDKSEMTHKNPNLRKTG 370
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 27 PGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGEYVGIF-PVTVHRLEG 179
P DL+ + + LC+I T +L+ + ++ L E G+ PV + +L G
Sbjct: 274 PADLVLLSSSEPEGLCYIETANLDGETNLKIKQALPETAGLLKPVELGQLSG 325
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 178 PSRRWTVTGNIPTYSPNIATTSSSCITSRLPVTMKHNES 62
P+ WT+ N+ TY+ + T SS + V N S
Sbjct: 528 PNYPWTMYANVTTYTVQLEDTLSSGMIENAAVAATQNNS 566
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 189 RINPQTQPAEKIRRETQRADSWLGCTA 269
R+ +T+ AEKIRR Q+ D + G T+
Sbjct: 525 RVLSETEQAEKIRRLQQQLDRFAGKTS 551
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 163 TVTGNIPTYSPNIATTSSSCITSRLPVTMKHNESIDSP 50
++T N+PT P +T SSS I S P + + ++ P
Sbjct: 142 SITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP 179
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 184 SRPSRRWTVTGNIPTYSPNIA 122
+R + WTVT N+P P I+
Sbjct: 257 NREEKDWTVTSNVPNKEPPIS 277
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 4.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 127 YWVSMWEYFRSPSIVSKVSKS 189
YWV +WE +P + ++KS
Sbjct: 3 YWVELWESIFTPGVTPVLAKS 23
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 6 FQMSHSAPGDL----LYHTGESIDSLCFIVTGSL 95
++ S P DL ++ +G+S+D+LC IV SL
Sbjct: 524 YEESDYVPADLVRLSIFMSGKSVDALCSIVHRSL 557
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -1
Query: 248 ISSLSFSPDLLSGLCLWVNSLFETFETMDGDRKYSHILTQYSD 120
+++ F + L W+N+LF+ F + G ++ H+L + D
Sbjct: 1108 VNNTEFKSQVYLYLREWINALFDRFTFLLG-KESEHLLNELDD 1149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,782
Number of Sequences: 5004
Number of extensions: 36773
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -