Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1374
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0974 - 9813896-9813950,9814537-9814572,9814666-9814708,981...    28   6.4  
06_01_0084 + 675185-677389                                             27   8.5  

>08_01_0974 -
           9813896-9813950,9814537-9814572,9814666-9814708,
           9814881-9815277
          Length = 176

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = -2

Query: 367 FSLINYALTPSALTLGAGLGTSVTVLVELDKEFAVQPNHESAR*VSRRIFSAGCVCGLIR 188
           FS   Y   PS LT+        T  +E+ +     P+ +  +  S  +      CGL  
Sbjct: 6   FSCCTYPPAPSPLTINESRRRLTTPDLEIPR---ASPSLDQPKPCSDEVMDRTGPCGLHL 62

Query: 187 SSRPSRRWTVTGNIP 143
              PSRR  +  N P
Sbjct: 63  GVMPSRRMPIDANPP 77


>06_01_0084 + 675185-677389
          Length = 734

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 271 FAVQPNHESAR*VSRRIFSAGCVCGLIRSSRPSRRWTVTGNIPTYSPNI 125
           FA++   E    V+  I  A C CG IR++R    W  T N  +++  I
Sbjct: 186 FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMI 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,100,895
Number of Sequences: 37544
Number of extensions: 229781
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)