Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1374
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) 46 2e-05
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_16528| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_50313| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.6
SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6) 29 2.1
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7) 29 3.8
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_48260| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_52501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 27 8.7
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +3
Query: 3 HFQMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGE 137
+F + H AP D + H GES+D L FI GSLEV Q + VV +LGE
Sbjct: 578 NFWICHVAPNDRIIHHGESLDVLYFIARGSLEVKQGEAVVGLLGE 622
>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
Length = 1344
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +3
Query: 15 SHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGE 137
+H PGD + + G+ I L F+V G++EV++DD ++AILG+
Sbjct: 1000 THLPPGDFIIYQGDEISHLYFLVRGTVEVLKDDTIMAILGK 1040
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3
Query: 27 PGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGE 137
PG+ L + I+S+ +I +GS+EV+Q + V AILG+
Sbjct: 474 PGEYLLTQNDVINSIYYIASGSMEVLQGESVAAILGQ 510
>SB_16528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 6 FQMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGE 137
F + PG L G+ + L FI G +EV++D +LG+
Sbjct: 78 FDIRRHLPGQYLIKQGDEVKKLYFIAKGFVEVLKDGHCELVLGK 121
>SB_50313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 6 FQMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAIL 131
F + + PG + G+ + L F+V G+++VI+ + ++IL
Sbjct: 43 FNIKNYLPGHYIIKEGDEVKYLYFVVEGTVDVIKSGKSLSIL 84
>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 674
Score = 29.9 bits (64), Expect = 1.6
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = -2
Query: 331 LTLGAGLGTSVTVLVELDKEFAVQPNHESAR*VSRRIFSAGCVCGLIRSSRPSRRWTVTG 152
L+ A +GT+VT + LDK+ ++ A +F+ V G IR+ R
Sbjct: 138 LSENASIGTNVTKITALDKDIGDTISYSIANGDPYGLFTIDNVTGEIRTVAELDR----E 193
Query: 151 NIPTYSPNI-ATTSSSCITSRLPVTMKHNESIDSPVWYSRSPGAECDIWK 5
N+ Y + A S + ++ L V ++ + D+P +S PG + W+
Sbjct: 194 NVTQYELFVQAKDSVNLVSDLLKVVVQVEDVNDNPPVFS-MPGYTIEYWE 242
>SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)
Length = 282
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 166 WTVTGNIPTYSPNIATTSSSCITSRLPVTMKHNESIDSPV 47
WTV G + + T +C+T V ++HN S D+ V
Sbjct: 125 WTVIGRVCKDRDDDVTARVNCVTVEREVLLEHNASSDTTV 164
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 51 GESIDSLCFIVTGSLEVIQDDE-VVAILGEYVGIFPVTVHRLEGLEERINPQTQPAEKIR 227
GE I+SL + TG+LE +QD E +V L + I VH +E L E I + Q + +
Sbjct: 5014 GEQINSLLQLSTGTLEQLQDPEGLVKSLSRRLEIIKKRVH-VE-LNE-IEKEQQIEKDLE 5070
Query: 228 RETQRADSWL 257
E W+
Sbjct: 5071 NEISEIIEWM 5080
>SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)
Length = 323
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -3
Query: 522 YMSTTSPAVYNHTFS*TFMITTNVIIFNTSRYQLHFMKLF 403
Y +T+ ++Y HT++ T T +V +NT+ H++ +
Sbjct: 47 YNTTSQASLYVHTYNTTSQATRHVHTYNTTSQATHYVHTY 86
>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 51 GESIDSLCFIVTGS--LEVIQDDEVVAILGEYVGIFP 155
GE +DS C I+ GS +EV + V LG+ G+ P
Sbjct: 215 GEELDSWCVILNGSVIIEVENEPPVELHLGDSFGVEP 251
>SB_48260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 33 DLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGEYVGIFPV--TVHRLEGLEER 191
D++Y TG L V + + A YV I P+ T H +G+ ER
Sbjct: 92 DIIYQTGHQPPELPIAVIVHFDHYTGPSISATQNSYVPICPITATAHMADGIHER 146
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 14 VALRARRPAVPHGRVDRFVVFHRYRESRS 100
+A RA AV GRVD + FHR ++S S
Sbjct: 534 IANRAAE-AVSQGRVDNIITFHRAQQSTS 561
>SB_52501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 33 DLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGEYVGIFPV--TVHRLEGLEER 191
D++Y TG L V + + A YV I P+ T H +G+ ER
Sbjct: 92 DIIYQTGHQPPELPIAVIVHFDHYTGPSISATQNSYVPICPITATAHMADGIHER 146
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 75 FIVTGSLEVIQDDEVVAILGEYVGIFPVTVHRLEGLEERINPQTQPAEKIRR 230
F + G EV+ + EV + + G+F + +++ + RIN Q + + +
Sbjct: 232 FPLIGETEVLVEYEVHELTARFKGVFGTGLGKIKEFQARINVQPEATPRFHK 283
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 412 HKM*LISRCIKYNNISCYHKCLAERVIVY 498
H + ++ +K NN+S +HKC + I++
Sbjct: 879 HLVLMLQYSVKSNNLSLFHKCNGDMAILF 907
>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 24 APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVV 122
+PGD + GE + + GSLEV+ + E V
Sbjct: 546 SPGDFICRQGEKGREMYIVNKGSLEVLDEKETV 578
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,005
Number of Sequences: 59808
Number of extensions: 272556
Number of successful extensions: 901
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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