Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1374
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38480.1 68417.m05438 transducin family protein / WD-40 repea...    31   0.43 
At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C...    30   1.0  
At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C...    30   1.0  
At5g51270.1 68418.m06356 protein kinase family protein contains ...    29   2.3  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    28   5.4  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    27   9.4  
At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family pr...    27   9.4  
At1g09290.1 68414.m09506 expressed protein This gene is continue...    27   9.4  

>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
           family protein contains contains Pfam PF00400: WD
           domain, G-beta repeat (7 copies, 3 weak);similar to gene
           PC326 protein - mouse, PIR2:S37694
          Length = 471

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +3

Query: 12  MSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGEYVGIFPVTVHRLEGLEER 191
           + H  PG L+      I  L F     L     DE + +    +G+ P         EER
Sbjct: 238 IDHFCPGHLIGDDHVGITGLAFSDQSELLASYSDEFIYLFTPDMGLGPTPYPSSTKTEER 297

Query: 192 INPQTQPAEKIRRETQRADSWLG 260
           + PQ    E   RET +  ++ G
Sbjct: 298 MTPQVY-KEHTNRETVKGVNFFG 319


>At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 351

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 248 ISSLSFSPDLLSGLCLWVNSLFETFETMDGDRKYSHILTQY 126
           ++SLS SP+  S   LW  +  +TF  +D D K S  +  Y
Sbjct: 127 LASLSSSPECSSPFDLWKQACLKTFSIIDLDLKISPSIDSY 167


>At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 351

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 248 ISSLSFSPDLLSGLCLWVNSLFETFETMDGDRKYSHILTQY 126
           ++SLS SP+  S   LW  +  +TF  +D D K S  +  Y
Sbjct: 127 LASLSSSPECSSPFDLWKQACLKTFSIIDLDLKISPSIDSY 167


>At5g51270.1 68418.m06356 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 819

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 48  TGESIDSLCFIVTGSLEVIQDDEVVAILGEYVGIFPV 158
           TG+   +L + V  ++E   DDE++ IL E  G +P+
Sbjct: 660 TGQQAMALTYTVETAMENNNDDELIQILDEKAGNWPI 696


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 24  APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGEYV 143
           APGD  + T E ++ + F+  G   V+   +V  +L +Y+
Sbjct: 251 APGDTSWATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYI 290


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 129 LGEYVGIFPVTVHRLEGLE 185
           LG YV ++P TVHR + +E
Sbjct: 367 LGGYVAVYPPTVHRYDRVE 385


>At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 295

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -2

Query: 409 IICIKRRFCVDA*LFSLINYALT-PSALTLGAGLGT-SVTVLVELDKEFAV 263
           I+C K + C+   L ++ N+ L   +++ L  G  T  +TVL ++DK+F++
Sbjct: 230 ILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQMDKDFSM 280


>At1g09290.1 68414.m09506 expressed protein This gene is continued
           on the 5' end of BAC T12M14
          Length = 348

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 9   QMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILGEYVG 146
           +  + AP  LL+H+       C I     E     EV++ILG+Y+G
Sbjct: 46  RFDYKAPSSLLHHSHSGFLVTCNI---KREKSATKEVMSILGKYIG 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,689
Number of Sequences: 28952
Number of extensions: 187132
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)