Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1373
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 163 2e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 76 5e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 7e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 9e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 60 2e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 7e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 7e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.8
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 7.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.6
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 25 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 163 bits (396), Expect = 2e-41
Identities = 86/141 (60%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLRHPRDHI*LHHEVRRGHP*---GLD 507
KSYELPDG + P LG L + H ++ + + L
Sbjct: 238 KSYELPDGQVITIGNERFRAPEALFQPSALG---LENAGIHEATYNSIMKCDVDIRKDLY 294
Query: 506 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQ
Sbjct: 295 GNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQ 354
Query: 326 MWISKQEYDESGPSIVHRKCF 264
MWISKQEYDESGP IV+RKCF
Sbjct: 355 MWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 75.8 bits (178), Expect = 5e-15
Identities = 35/83 (42%), Positives = 58/83 (69%)
Frame = -1
Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 333
L +N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 332 QQMWISKQEYDESGPSIVHRKCF 264
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = -2
Query: 661 PTGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 509
P Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R L
Sbjct: 248 PDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTL 298
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.4 bits (177), Expect = 7e-15
Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 6/85 (7%)
Frame = -1
Query: 503 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTF 333
N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407
Query: 332 QQMWISKQEYDESGP---SIVHRKC 267
Q+WIS+QEY+E G +++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432
Score = 27.1 bits (57), Expect(2) = 0.032
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 664 FPTGQVITIGNERFRCPEALFQP 596
FP G + G ER++ PE LF P
Sbjct: 266 FPDGSRMMFGAERYQIPEHLFVP 288
Score = 25.0 bits (52), Expect(2) = 0.032
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 571 GIHETTYNSIMKCDVDIRKDL 509
GI + N I +CDVDIR L
Sbjct: 326 GIPQLFQNCISECDVDIRASL 346
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.7 bits (168), Expect = 9e-14
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -1
Query: 503 NTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQ 330
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405
Query: 329 QMWISKQEYDESG 291
+W+SKQEYDE G
Sbjct: 406 HLWVSKQEYDEVG 418
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Frame = -2
Query: 664 FPTGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKD 512
FP G G ERFR E LF PSF + G+HE Y SI+ CD ++R
Sbjct: 283 FPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSP 342
Query: 511 L 509
L
Sbjct: 343 L 343
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = -2
Query: 661 PTGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 509
P G+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK L
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYL 293
Score = 56.4 bits (130), Expect = 4e-09
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = -1
Query: 497 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 351
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 350 AS-LSTFQQMWISKQEYDESG 291
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Frame = -1
Query: 515 GLDANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 378
GL N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 377 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 273
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 676 SLTNFPTGQVITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDL 509
S+T T I +G ERF PE F P + + E N + +D+RK L
Sbjct: 272 SITGHST--TIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGL 326
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = -1
Query: 503 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 324
N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380
Query: 323 WISKQEYDESGPSIVHRK 270
I++ EY E G +I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 652 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 542
QV+ + NERF PE LF PS + + GI E S+
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -1
Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 333
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 332 QQMWISKQEYDESGPSIV 279
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 631 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 509
E+ R PE +F PS +G++ GI E + + + ++ ++ L
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKL 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -1
Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 342
L ++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 341 STFQQMWISKQEYDESGPSIVHRK 270
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 371 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 270
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 379 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 284
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 446 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 336
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -1
Query: 521 P*GLDANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 369
P G A +V +GG+ +PGI + I + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 489 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 310
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 309 GV 304
V
Sbjct: 534 AV 535
>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 661 PTGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMK 536
PTG +G+ C E L+ F+ + H TTY K
Sbjct: 141 PTGLPAALGSAYSICGEELYVDKFMTKQDIQEHITTYTEAAK 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,244
Number of Sequences: 5004
Number of extensions: 57638
Number of successful extensions: 197
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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