Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1373
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 1e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 3e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 3e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 171 3e-43
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 171 4e-43
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 149 2e-36
SB_54| Best HMM Match : Actin (HMM E-Value=0) 69 5e-12
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 55 6e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 1e-07
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 28 8.0
SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087) 28 8.0
SB_14138| Best HMM Match : DUF1570 (HMM E-Value=6.7) 28 8.0
SB_11944| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 28 8.0
SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5) 28 8.0
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.0
SB_17308| Best HMM Match : DUF1570 (HMM E-Value=7) 28 8.0
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 173 bits (420), Expect = 1e-43
Identities = 93/142 (65%), Positives = 103/142 (72%), Gaps = 4/142 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GL 510
KSYELPDG + P L LG S H + + ++R+ L
Sbjct: 212 KSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKD----L 267
Query: 509 DANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 330
ANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 268 YANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 327
Query: 329 QMWISKQEYDESGPSIVHRKCF 264
QMWISKQEYDESGP+IVHRKCF
Sbjct: 328 QMWISKQEYDESGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 171 bits (417), Expect = 3e-43
Identities = 93/142 (65%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GL 510
KSYELPDG + P LG S H + + ++R+ L
Sbjct: 201 KSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----L 256
Query: 509 DANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 330
ANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 257 YANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 316
Query: 329 QMWISKQEYDESGPSIVHRKCF 264
QMWISKQEYDESGP+IVHRKCF
Sbjct: 317 QMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 171 bits (417), Expect = 3e-43
Identities = 93/142 (65%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GL 510
KSYELPDG + P LG S H + + ++R+ L
Sbjct: 239 KSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----L 294
Query: 509 DANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 330
ANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 295 YANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 354
Query: 329 QMWISKQEYDESGPSIVHRKCF 264
QMWISKQEYDESGPSIVHRKCF
Sbjct: 355 QMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 171 bits (417), Expect = 3e-43
Identities = 93/142 (65%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GL 510
KSYELPDG + P LG S H + + ++R+ L
Sbjct: 238 KSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----L 293
Query: 509 DANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 330
ANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 294 YANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 353
Query: 329 QMWISKQEYDESGPSIVHRKCF 264
QMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 171 bits (416), Expect = 4e-43
Identities = 93/142 (65%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GL 510
KSYELPDG + P LG S H + + ++R+ L
Sbjct: 239 KSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----L 294
Query: 509 DANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 330
ANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 295 YANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 354
Query: 329 QMWISKQEYDESGPSIVHRKCF 264
QMWISKQEYDESGPSIVHRKCF
Sbjct: 355 QMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 169 bits (412), Expect = 1e-42
Identities = 92/142 (64%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GL 510
KSYELPDG + P LG S H + + ++R+ L
Sbjct: 238 KSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----L 293
Query: 509 DANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 330
ANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 294 YANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 353
Query: 329 QMWISKQEYDESGPSIVHRKCF 264
QMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 149 bits (361), Expect = 2e-36
Identities = 78/141 (55%), Positives = 95/141 (67%), Gaps = 3/141 (2%)
Frame = -1
Query: 677 KSYELPDGSGHHYRKRKIPLPRGSLPTLVLGYGSLRHPRDHI*LHHEVRRGHP*---GLD 507
K+YELPDG + P LG + P H +++ + + L
Sbjct: 12 KTYELPDGQVISIGNERFRCPEAMFQPAFLG---MEAPGIHEAIYNCIMKCDVDIRKDLY 68
Query: 506 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 327
+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQ
Sbjct: 69 SNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQ 128
Query: 326 MWISKQEYDESGPSIVHRKCF 264
MWI+K+EY E GP IVHRKCF
Sbjct: 129 MWIAKEEYHEYGPPIVHRKCF 149
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = -2
Query: 661 PTGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 509
P GQ I IG+ERFR E LFQPS LG + GIHE+ + SI KCD+D+R +L
Sbjct: 2288 PDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAEL 2338
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 16/96 (16%)
Frame = -1
Query: 503 NTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERKYSV 372
N VLSGG+TM+ R+Q++I + P ++ ++I+ ++Y+V
Sbjct: 245 NIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAV 304
Query: 371 WIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 264
W GGS+LAS F + +K +YDE GPSI F
Sbjct: 305 WFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 646 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDL 509
+ + ERF PE F P F + + E N I C +D+R+ L
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPL 242
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 54.4 bits (125), Expect = 8e-08
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = -2
Query: 661 PTGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKD 512
P G+V+ + ERF PEALFQP + +E G+ E +N+I D+D R +
Sbjct: 247 PDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSE 296
Score = 44.4 bits (100), Expect = 9e-05
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = -1
Query: 596 LVLGYGSLRHPRDHI*LHHEVRRGHP*GLDANTVLSGGTTMYPGIADRMQKEITA-LAPS 420
+VL GS +P L E+++ L VL G T+ Q +TA
Sbjct: 301 IVLSGGSTMYPGLPSRLEREIKQ-----LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQ 355
Query: 419 TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 291
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 356 KFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Frame = -1
Query: 515 GLDANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 345
GL + +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 344 L 342
L
Sbjct: 230 L 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -1
Query: 512 LDANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 360
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 359 SILASLSTFQQMWISKQEYDE 297
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 616 PEALFQPSFLGMEACGIHET 557
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 503 NTVLSGGTTMYPGIADRMQKEITALAP 423
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 440 FPFAYGRRFQGTWWYHRTIRCWRQVLTDVHVA--LHDGVICGLVDAAS 577
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087)
Length = 466
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 665 LPDGSGHHYRKRKIPLPRGSLPTLVLGYG-SLRHPRD 558
+P+G K K+PL RG TL+ Y ++ +P D
Sbjct: 52 IPEGINDRLMKFKLPLGRGRSATLISAYAPTMTNPED 88
>SB_14138| Best HMM Match : DUF1570 (HMM E-Value=6.7)
Length = 169
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 665 LPDGSGHHYRKRKIPLPRGSLPTLVLGYG-SLRHPRD 558
+P+G K K+PL RG TL+ Y ++ +P D
Sbjct: 102 IPEGINDRLMKFKLPLGRGRSATLISAYAPTMTNPED 138
>SB_11944| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 225
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 665 LPDGSGHHYRKRKIPLPRGSLPTLVLGYG-SLRHPRD 558
+P+G K K+PL RG TL+ Y ++ +P D
Sbjct: 75 IPEGINDRLMKFKLPLGRGRSATLISAYAPTMTNPED 111
>SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)
Length = 327
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 440 FPFAYGRRFQGTWWYHRTIRCWRQVLTDVHVA--LHDGVICGLVDAAS 577
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +1
Query: 355 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRS--AIP-----GYMVVPPDNTVLASS 513
+DPP+ +Y L+GG ++ + FCI +P +V PD + ASS
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQGFVVPTPPECNSAIVLPDARITASS 817
Query: 514 PYGCPRRTS 540
R S
Sbjct: 818 EANSAHRAS 826
>SB_17308| Best HMM Match : DUF1570 (HMM E-Value=7)
Length = 140
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 665 LPDGSGHHYRKRKIPLPRGSLPTLVLGYG-SLRHPRD 558
+P+G K K+PL RG TL+ Y ++ +P D
Sbjct: 73 IPEGINDRLMKFKLPLGRGRSATLISAYAPTMTNPED 109
>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 440 FPFAYGRRFQGTWWYHRTIRCWRQVLTDVHVA--LHDGVICGLVDAAS 577
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,746,154
Number of Sequences: 59808
Number of extensions: 492039
Number of successful extensions: 1393
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -