Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1372
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24GK0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q55CM9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  
UniRef50_A5K6G6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_Q24GK0 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1464

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 491  LKFS-RYYNQTSKSSHELLKIKYRHSNNRLTKKLLYLNSVGLTDRI 625
            ++FS ++ NQT KSS  +LK      NN+  KK LY N V   +++
Sbjct: 1071 IQFSMQHINQTPKSSQSILKKHNSIVNNQANKKSLYQNQVNKNEKV 1116


>UniRef50_Q55CM9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 216

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +2

Query: 485 TILKFSRYYNQTSKSSHELLKIKYRHSNNRLTKKLLYLNSVGLTDRIPKHXSGHWXTQTP 664
           TIL+   Y N+T K+   L KI    +NN+ +K++  LN V +T    K  SG   ++TP
Sbjct: 96  TILE-REYQNKTKKTGEALRKIYNNAANNKKSKQIKVLNDV-VTPTASKRWSG-TVSKTP 152

Query: 665 S 667
           S
Sbjct: 153 S 153


>UniRef50_A5K6G6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1044

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 446 KKCFVIXILFKXMTILKFSRYYNQTSKSSHELLKIKYRHSNNRLTKKLLYLNS 604
           KKCF I  L+    ILK     N   K+  E+ KI  ++S+ +L  K+ Y+N+
Sbjct: 41  KKCFKIKCLYNYYYILKDD--INVEIKNEEEINKIMLKNSSMKLICKIKYINN 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,948,054
Number of Sequences: 1657284
Number of extensions: 8071901
Number of successful extensions: 15523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15521
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)