Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1372
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   1.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    25   7.6  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 297 WGNAK*HY*LKITYIXTSQNXLSMAPHVIPCLWLXN 190
           W N   +Y L I++I  SQ      P  +PC +  N
Sbjct: 62  WLNGSSYYGLAISHIDDSQRVFGPDPESVPCQYYFN 97


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 419  IHLPTLTEKKKCFVIXILFKXMTILKFSRYYNQTSKSSHELLK 547
            +HL ++    K  V+  L+  + ILKFS++++    S H L++
Sbjct: 1192 VHLLSINSHGKQSVVEDLWNPL-ILKFSKHFSNLENSFHSLVQ 1233


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 55  ACEFLDFFFLNVETKGNKTNEHENXXXKITFHV 153
           A   LD  FLN  T G   +EH+    K+ F V
Sbjct: 93  ASAMLDICFLNTLTPGAIESEHKKRSVKLEFTV 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,320
Number of Sequences: 5004
Number of extensions: 38519
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)