Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1372
         (676 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   1.7  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   5.0  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 497 FSRYYNQTSKSSHELLKIKYRHSNNRLTKKLLYL 598
           F R+YN  +KS+H    I Y+ + +  T ++  L
Sbjct: 470 FWRFYNSKTKSTHTPKSITYKGATSANTNEMCNL 503


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 545  KIKYRHSNNRLTKKLLY 595
            K+ Y H+NN L+ K +Y
Sbjct: 1264 KVHYNHANNTLSTKSVY 1280


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 545  KIKYRHSNNRLTKKLLY 595
            K+ Y H+NN L+ K +Y
Sbjct: 1265 KVHYNHANNTLSTKSVY 1281


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,154
Number of Sequences: 2352
Number of extensions: 9602
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)