Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1372
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    29   2.3  
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    28   7.0  
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    28   7.0  

>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 488 ILKFSRYYNQTSKSSHELLKIKYRHSNNRLTKKLLYLNSVGLTDRIPKH 634
           + KF +    TSKS  E+LK    +    L K    + SVG+TD + KH
Sbjct: 430 VRKFEKDEKLTSKSPTEVLK---EYVTKLLAKDSEKIKSVGMTDYVKKH 475


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 416 EIHLPTLTEKKKCFVIXILFKXMTILKFSRYYNQTSKSSHELLKIKY--RHSNNRLTKKL 589
           E+   TL  K++   I IL+K + ++  S  Y  +SK+ +    I+Y  R  N  +  + 
Sbjct: 324 EVSRETLETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEK 383

Query: 590 LYLNSVGLT 616
           ++L S G+T
Sbjct: 384 IFLVSDGMT 392


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 416 EIHLPTLTEKKKCFVIXILFKXMTILKFSRYYNQTSKSSHELLKIKY--RHSNNRLTKKL 589
           E+   TL  K++   I IL+K + ++  S  Y  +SK+ +    I+Y  R  N  +  + 
Sbjct: 324 EVSRETLETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEK 383

Query: 590 LYLNSVGLT 616
           ++L S G+T
Sbjct: 384 IFLVSDGMT 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,378,376
Number of Sequences: 27780
Number of extensions: 212848
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)