Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1372
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11490.1 68417.m01847 protein kinase family protein contains ...    31   0.70 
At5g48280.1 68418.m05963 hypothetical protein                          27   8.7  
At2g24700.1 68415.m02951 transcriptional factor B3 family protei...    27   8.7  

>At4g11490.1 68417.m01847 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 636

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +2

Query: 491 LKFSRYYNQTSKSSHELLKIKYRHSNNRLTKKLLYLNSV--GLTDRIPKHXSGHWXTQTP 664
           L F+RY N +      L  +   HSN  +   L YLN++   LTDR+    S  +     
Sbjct: 118 LCFARYSNSSFFKRVGLHPLYMEHSNVDIKSNLTYLNTIWEALTDRLMSDASSDYNASLS 177

Query: 665 SXTY 676
           S  Y
Sbjct: 178 SRRY 181


>At5g48280.1 68418.m05963 hypothetical protein 
          Length = 145

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 392 LMKCVMEQNVGLKCIWGFNDLSKFIGYSLDING 294
           +MK ++EQ + +  I+ FN  S+F  Y LD  G
Sbjct: 74  IMKVMLEQIIVMYEIYNFNCNSRFFVYGLDPTG 106


>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 555

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 476 KXMTILKFSRYYNQTSKSSHELLKIKYRHSNNRLTKKLLYLNSVGLTDRIPKHXSGH 646
           + +TI  + R+     K   +LLK K  H+      +LL LNS  L    P + + H
Sbjct: 331 RFLTIRGWRRFCVANGKKPGDLLKFKLVHNEETPVLQLLPLNSEDLHKLNPSNDTRH 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,319,200
Number of Sequences: 28952
Number of extensions: 185087
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)