Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1371
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         31   0.54 
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680...    27   5.0  
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51...    27   6.6  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 86  IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPW 253
           +D+ GQ  AE L + ++   ++  FV GY +  F   +             TVP W
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNW 56


>10_08_0663 -
           19666476-19667017,19667664-19667755,19668039-19668095,
           19668304-19668447,19668567-19668613,19668733-19668791,
           19668975-19669045,19669274-19669341,19669431-19669598,
           19669885-19669944,19670075-19670251
          Length = 494

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 178 SAILAVSVYSWCRISA--CCHSYCSSMAMYRRNPLNWQV 288
           S + AV +   C ++A  CCH +C   A+Y  +  N +V
Sbjct: 298 SDLCAVCLERSCSVAAEGCCHEFCIKCALYLCSTSNTRV 336


>02_01_0073 -
           509377-509425,510200-510270,510420-510539,510684-510769,
           510843-510915,510996-511718,513752-514081,514124-514210,
           514494-515250,515336-515399,515477-515609,515702-515801,
           515952-516088,516195-516341,516428-516478,517083-517148
          Length = 997

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 283 ASSEDCVGTLPWRNSKNGS 227
           A SEDC  +L WR   NGS
Sbjct: 316 APSEDCTPSLIWRAKSNGS 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,989,684
Number of Sequences: 37544
Number of extensions: 179017
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)