Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1371
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_38734| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 154 WFCMGLYSSAILAVS--VYSWCRISAC 228
           WFCMG Y + + AV+  V S+CR   C
Sbjct: 109 WFCMGYYVNGLKAVAKRVCSYCRKYGC 135


>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 283  ASSEDCVGTLPWRNSKNGSKQKSGTKNI 200
            A  ED   T+P R  +NG+KQ   +KNI
Sbjct: 1266 ADEEDDNDTVPKRKQRNGTKQGYVSKNI 1293


>SB_38734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 217 ISACCHSY-CSSMAMYRRNPLNWQV 288
           + +CCH Y C ++  ++ NP  W +
Sbjct: 12  LRSCCHKYFCINVYYFKANPTVWTI 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,976
Number of Sequences: 59808
Number of extensions: 214202
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)