Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1371
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical ...    49   1e-06
AF016664-8|AAY44018.1|  397|Caenorhabditis elegans Hypothetical ...    27   4.4  

>AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical
           protein C34B2.10 protein.
          Length = 105

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +2

Query: 74  IPTHIDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPW 253
           + +HID+ GQ  AE+ Y+ I+T+  I+GF+ G+  QQ S +++             +PPW
Sbjct: 15  LSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIILPPW 74


>AF016664-8|AAY44018.1|  397|Caenorhabditis elegans Hypothetical
           protein D2062.12 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 17  LLLWQVILI*FSKMDFFTSIPTHIDYVGQAKAEKLYRAIITL--FSIVG-FVWGYIVQQF 187
           LL W+V  I       FT+ P + D    +K EKL + +I +  F +V  FV  ++V   
Sbjct: 335 LLAWKVFSINTRSHTVFTAFPEYFDDEITSKKEKLLKFVIWVDKFLMVALFVQSFVVMYL 394

Query: 188 SQ 193
           ++
Sbjct: 395 AR 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,924,396
Number of Sequences: 27780
Number of extensions: 170623
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)