Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1371
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40042.1 68417.m05669 expressed protein                             37   0.007
At5g16350.1 68418.m01911 expressed protein                             32   0.15 
At2g22425.1 68415.m02659 expressed protein weak similarity to Sw...    30   0.59 
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    27   4.1  

>At4g40042.1 68417.m05669 expressed protein
          Length = 155

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 86  IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWQC 259
           +D+ GQ  AE+L + ++ + ++V FV GY    F   +             T+P W C
Sbjct: 63  MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPC 120


>At5g16350.1 68418.m01911 expressed protein
          Length = 488

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -1

Query: 436 RPRTVXXXXX*NLLTIGYI*EVKVVQTNFEIMDFTSFLSWLLVCHHRS*EPASSEDCVGT 257
           R R +      N+ T  Y   V V++ N  + D  SF+S +L C H++  P      + +
Sbjct: 108 RSRPLWDIHILNVKT-SYAEAVGVIRFNHALADGMSFISLVLACTHKTSNPDMLSTAIPS 166

Query: 256 LPWRNSKNGSKQKSG 212
           +  R++ + S +K+G
Sbjct: 167 VKRRSTVSHSLKKTG 181


>At2g22425.1 68415.m02659 expressed protein weak similarity to
           Swiss-Prot:Q9Y6A9 microsomal signal peptidase 12 kDa
           subunit (SPase 12 kDa subunit, SPC12, HSPC033) [Homo
           sapiens]
          Length = 92

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 86  IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPW 253
           +D+ GQ   E+L + ++ +  +V  V GY  + F   +             TVP W
Sbjct: 1   MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNW 56


>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 294 LRNLPVQRIASVHCHGGTVRMAASRNPAPRIYTD 193
           +  + V +I  +HCH  +      +N  PRI++D
Sbjct: 371 MTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSD 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,264,796
Number of Sequences: 28952
Number of extensions: 153040
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)