Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1367
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    28   1.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.0  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   9.3  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 641 KTATHKTCLQIKRLNYYNGIITRIKFRKNKIF 736
           ++A H+  L++  LN YN  +TR   RK  IF
Sbjct: 196 ESAKHEMQLKLTMLNIYNSRLTRRAVRKQTIF 227


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -2

Query: 224 LFTNTTQAQRVNVLNASYI--VGVVGCQVNFVTEFLDSV 114
           ++ +T+ ++ ++ L+A YI  +GV+G   + + + +DSV
Sbjct: 54  IYNSTSASEILSTLDAKYITIIGVIGSSNSSIQDLIDSV 92


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 572  PPGPLVFLYYFNFISTIVMNHAGKTATHKT 661
            PP PLV      F+S  V N+  K   HKT
Sbjct: 950  PPPPLVSAAGGKFVSPAVSNNISKDDLHKT 979


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 293 LGYECEGDS*CFAFVNVYKYSVVLFYCCFNIKLLLSIYN 409
           L ++C+ D  C++ + V++ S  L      +  +LS+ N
Sbjct: 78  LQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCN 116


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 120 IKKFRNKINLTPHYAYYVARVQHIHTLRLC 209
           +  FRN +++      + +  +HIH  RLC
Sbjct: 102 VSAFRNNLSILSKELSFFSFARHIHNRRLC 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,787
Number of Sequences: 5004
Number of extensions: 51888
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)