Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1366
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128           30   2.1  
05_03_0637 - 16465433-16466242                                         29   4.8  
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575...    28   6.3  

>10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128
          Length = 458

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 642 VDEVFHKLFRLNRHSATYPLRAMILDATTSLPSI-TAGC 529
           +D VFHK  RL + S  Y    ++L+  T  P+I  A C
Sbjct: 301 IDPVFHKTGRLTQKSDVYSFGVVLLELITRKPTIYDANC 339


>05_03_0637 - 16465433-16466242
          Length = 269

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 338 PVRPTFKQRHQPPGLHSTKHGLAGHHYSLQNVTEPNPRNPPM 213
           P+RP   +   PP LH   H    HH+ LQ   +P P  PP+
Sbjct: 137 PLRPLLPR---PPHLHPAFHHQPFHHHLLQ--PQPPPPPPPL 173


>03_05_0451 -
           24456923-24457069,24457161-24457310,24457408-24457513,
           24457715-24458040,24458129-24458263,24458350-24458430,
           24458516-24458704,24458794-24458986,24459068-24459174,
           24459280-24459354,24459446-24459601,24459745-24459828,
           24459933-24460046,24460119-24460214,24460302-24460392,
           24460500-24460615,24460878-24461037,24461964-24462217
          Length = 859

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 538 CGLRLAPAHAVPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVE 398
           C L+ AP           M     + L +  L++I  DDG++  C E
Sbjct: 758 CSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTE 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,045,826
Number of Sequences: 37544
Number of extensions: 446065
Number of successful extensions: 1104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)