Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1366
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    31   0.80 
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    31   0.80 
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   5.7  
AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 339  SRSTDLQAAPPASRTSFYQTWACRTSLFIAK 247
            SRS   +AAPP  + S   TW+ +T  F+AK
Sbjct: 1567 SRSRSREAAPPPQQRSRNSTWSEQTDTFLAK 1597


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 339 SRSTDLQAAPPASRTSFYQTWACRTSLFIAK 247
           SRS   +AAPP  + S   TW+ +T  F+AK
Sbjct: 192 SRSRSREAAPPPQQRSRNSTWSEQTDTFLAK 222


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 564 ATTSLPSITAGCGWPQHMLCPRALKPACPSNCS 466
           A++ +P  T  C   Q  +C  A +P+C S+CS
Sbjct: 319 ASSCMPQCTPQCV-QQQTICAAACQPSCQSSCS 350


>AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1a protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +2

Query: 446 IIVG*HNEQLEGHAGFSALGHSMCWGQPQPAVIEGSEVVASRI----IALSG*VAECLFK 613
           II+G   E + G  G   LGH++C G    AVI G ++VA RI    + L G V   LF 
Sbjct: 228 IILG-ARENIAGVIGGGILGHALCTG---IAVI-GGKIVAQRISVRTVTLIGGVVFLLFA 282

Query: 614 RNSLW 628
            ++L+
Sbjct: 283 LSALF 287


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 534 GCGWPQHMLCPRALKPACPS--NCSLCYP 454
           GCG PQ   C  A  PACP   +C +C P
Sbjct: 37  GCGTPQPASCGCA--PACPQAPSCPVCPP 63


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -3

Query: 442 DRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGF--PFDRPSSSATSL---QDFIL--P 284
           D+ID +   ++   E  S+C        D++AM      D+  SS+ +L   QDF+L  P
Sbjct: 146 DKIDLNSDGEVDMAEIKSYCKEMGVNLDDQKAMSIVKKMDQSGSSSVNLNEFQDFMLLYP 205

Query: 283 NMGLQDI 263
           +  ++D+
Sbjct: 206 STDMRDM 212


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/38 (50%), Positives = 20/38 (52%)
 Frame = +3

Query: 528 RSPQ*LKVVRSLRRGSLP*ADKSRNVCSNGIVYGRLRR 641
           RS     VVRS+ RGS     KSR   S G VYGR  R
Sbjct: 93  RSSSRRSVVRSVSRGS-----KSRRSSSRGSVYGRTGR 125


>AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical
           protein T13G4.2 protein.
          Length = 154

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 268 DITIHC-KTSPNLTHGTLPCQFKMSQN*NEIRILNHKF 158
           + T HC K +P+   GT+PC   M     E RIL   F
Sbjct: 63  NFTDHCFKMTPSANIGTMPCSHSMCVTVIEPRILAASF 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,697
Number of Sequences: 27780
Number of extensions: 372862
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)