Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1366
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...   111   5e-27
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          36   3e-04
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      36   3e-04
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          32   0.006
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      32   0.006
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          31   0.011
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      31   0.011
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    26   0.30 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score =  111 bits (268), Expect = 5e-27
 Identities = 55/124 (44%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
 Frame = -3

Query: 622 TIPFEQTFRDLSAQGNDPRRND-LTTFNYCGLRLAPAHAVPKGTEAGMPFQLFVMLSNYD 446
           TIPFE+TFR+L    N P   D L  F++CG        +PKG + G   +LFVM+S+Y 
Sbjct: 552 TIPFERTFRNLDE--NRPIGGDSLERFDFCGCGWPQHMLIPKGNKEGFAMELFVMVSDYK 609

Query: 445 LDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFDR-PSSSATSLQDFILPNMGLQ 269
            DR++Q++   + C +ASS+CGL+D+KYPD RAMG+PFDR P +   +L  F+  NM + 
Sbjct: 610 DDRVEQNE--PIGCKDASSYCGLRDRKYPDARAMGYPFDRQPRAGVETLAQFLTGNMAVT 667

Query: 268 DITI 257
           ++T+
Sbjct: 668 EVTV 671



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 674 LNAGENNIVRQSTKSSI 624
           L  G+N I ++STKSS+
Sbjct: 535 LQPGKNTIEQKSTKSSV 551


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 42/85 (49%)
 Frame = -3

Query: 508 VPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFD 329
           +PKG + GMP+ + V++S +D   + Q D         S   G   +   D RAMGFP D
Sbjct: 604 LPKGKKEGMPYNVLVVVSPFDDSNVVQID---------SPVWG---RHIYDGRAMGFPLD 651

Query: 328 RPSSSATSLQDFILPNMGLQDITIH 254
           +P          +L N+ ++++ +H
Sbjct: 652 KPVDPLL----LVLSNIHVKEVLVH 672


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 42/85 (49%)
 Frame = -3

Query: 508 VPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFD 329
           +PKG + GMP+ + V++S +D   + Q D         S   G   +   D RAMGFP D
Sbjct: 604 LPKGKKEGMPYNVLVVVSPFDDSNVVQID---------SPVWG---RHIYDGRAMGFPLD 651

Query: 328 RPSSSATSLQDFILPNMGLQDITIH 254
           +P          +L N+ ++++ +H
Sbjct: 652 KPVDPLL----LVLSNIHVKEVLVH 672


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = -3

Query: 508 VPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFD 329
           +P+G + GMPFQLF+ +S             +     +  + G K     D+R+ GFP D
Sbjct: 606 LPRGKKEGMPFQLFLYVSPV---------SSEYNQYNSRIWGGYKF----DKRSFGFPLD 652

Query: 328 RPSSSATSLQDFIL--PNMGLQDITIHCK 248
           +P      L DF    PNM  +DI I+ K
Sbjct: 653 KP------LYDFNYEGPNMLFKDILIYHK 675


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = -3

Query: 508 VPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFD 329
           +P+G + GMPFQLF+ +S             +     +  + G K     D+R+ GFP D
Sbjct: 606 LPRGKKEGMPFQLFLYVSPV---------SSEYNQYNSRIWGGYKF----DKRSFGFPLD 652

Query: 328 RPSSSATSLQDFIL--PNMGLQDITIHCK 248
           +P      L DF    PNM  +DI I+ K
Sbjct: 653 KP------LYDFNYEGPNMLFKDILIYHK 675


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = -3

Query: 508 VPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFD 329
           +P+G   GM +++F  LS+     +D+ + K       S    L  K   D +  GFP D
Sbjct: 608 LPRGKPEGMRYKMFFFLSS-----MDESNTK-------SYEIPLYGKMTLDDKVFGFPLD 655

Query: 328 RPSSSATSLQDFILPNMGLQDITIH 254
           RP  +     +F +PNM  +D+ I+
Sbjct: 656 RPMWA----WNFTIPNMYFKDVFIY 676


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = -3

Query: 508 VPKGTEAGMPFQLFVMLSNYDLDRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGFPFD 329
           +P+G   GM +++F  LS+     +D+ + K       S    L  K   D +  GFP D
Sbjct: 608 LPRGKPEGMRYKMFFFLSS-----MDESNTK-------SYEIPLYGKMTLDDKVFGFPLD 655

Query: 328 RPSSSATSLQDFILPNMGLQDITIH 254
           RP  +     +F +PNM  +D+ I+
Sbjct: 656 RPMWA----WNFTIPNMYFKDVFIY 676


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 358  DRRAMGFPFDRPSSSATSLQDFILPNMGLQDITIHCKTSP 239
            D + +GFP DRP     SL    +PN+ ++D+ +  +  P
Sbjct: 969  DGKPLGFPLDRP----LSLGALSVPNIFVKDVLVFHQGQP 1004



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 511 AVPKGTEAGMPFQLFVMLSN 452
           ++PKG   G P Q  V++S+
Sbjct: 626 SLPKGQPQGFPLQFLVVISS 645



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 674 LNAGENNIVRQSTKS 630
           L+AGEN I+R S ++
Sbjct: 569 LHAGENTIIRNSQQA 583


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 507 CPRALKPACPSN 472
           CPR  +P C SN
Sbjct: 110 CPRRHRPVCASN 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 328  RPSSSATSLQDFILPNMGLQDITIH 254
            +PS   T  Q  ILP+  L   T+H
Sbjct: 1230 QPSQQQTQQQPIILPSQLLNIKTLH 1254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,268
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)