Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1365
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    28   1.3  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    27   3.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   4.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   5.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   7.1  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   7.1  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 580 NIYMSVGLPTPVGGPLMM 633
           +IY SV +PTP+GG L++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 371 TFPELAYTQGCAPSVLILFINMMLFSKNVPE 279
           TFPE +     +PS+  L +N M F    PE
Sbjct: 105 TFPEFSSVNSLSPSLFQLIVNRMRFDAIHPE 135


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 112 YWCWSDSRCSTIISLLLKIFLDF 44
           +W ++    ST++SLL+++ LDF
Sbjct: 538 FWPYAGFHFSTLVSLLIRLHLDF 560


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 299 FSKNVPEEGCKEFMFT 252
           FSKN+P   CK F+F+
Sbjct: 462 FSKNIPASLCKHFLFS 477


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 653 APPTTILIINGPPTGVGSPTLI 588
           APP  I+ + GPP G G  TLI
Sbjct: 71  APPPVIVAVMGPP-GTGKSTLI 91


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 279 GGLQGVHVHAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKN 151
           G L+      Q  +Q   V  AL+C+P +L+ KP  L     N
Sbjct: 608 GTLEDQLYPGQKYLQVGLVIAALICVPWLLIVKPFVLWRRHSN 650


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 240 IQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKVQVQLTIPVTTGV 103
           +Q  FV  + +     +   PL  LATK+ +PK  + + I V  G+
Sbjct: 403 VQPYFVLYSAMQFGFSIGSAPLISLATKQLHPKYHILVGIIVQIGI 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,832
Number of Sequences: 5004
Number of extensions: 56655
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)