Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1365
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0406 - 17688069-17690643,17691065-17691132                       32   0.45 
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809...    29   5.6  
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517...    29   5.6  
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802...    28   7.4  

>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 222 FIALLCIPVMLLGKPLYLLATKKNNPKVQVQLTIPVTTGVGPILDV 85
           F++ L +  +LLG  +Y+L        V  Q+ +  TTG GPI +V
Sbjct: 487 FVSSLFLLCLLLGTVVYILFISSQGEPVYCQIIVWTTTGNGPISNV 532


>11_02_0082 -
           8088169-8088284,8088613-8088697,8090344-8090442,
           8090537-8090609,8090694-8090804,8090901-8091074,
           8091184-8091574,8091662-8092283,8092379-8093251,
           8093294-8093800
          Length = 1016

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +1

Query: 148 VVLLSGEQVQRLPEQHDGDAEQRDEHEHALDVALSVNMNSLQPSSGTFFENSIMLMNRIS 327
           V   +GEQ Q + E++  +A ++  H H      SV M   +    +  E  I       
Sbjct: 202 VAYKTGEQGQAMMERNKENAAKKKYHHHLGSGGYSVAMPKWEEMEASLIERGIEPATANW 261

Query: 328 TDGAQPWVYASSG 366
            + ++ W YA  G
Sbjct: 262 PERSKFWYYAHGG 274


>01_03_0280 -
           14546334-14546815,14546894-14547560,14550333-14551754,
           14552831-14553127
          Length = 955

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +1

Query: 148 VVLLSGEQVQRLPEQHDGDAEQRDEHEHALDVALSVNMNSLQPSSGTFFENSIMLMNRIS 327
           V   +GEQ Q + E++  +A ++  H H      SV M   +    +  E  I       
Sbjct: 315 VAYKTGEQGQAMMERNKENAAKKKYHHHLGSGGYSVAMPKWEQMEASLIERGIEPATANW 374

Query: 328 TDGAQPWVYASSG 366
            + ++ W YA  G
Sbjct: 375 PERSKFWYYAHGG 387


>02_05_0350 -
           28179063-28179584,28179674-28180041,28180179-28180270,
           28180366-28180412
          Length = 342

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 253 VNMNSLQPSSGTFFENSIMLMNRISTDGAQ-PWVYASSG 366
           VN+ +LQP   T F N   L NR+S   ++ P    S+G
Sbjct: 73  VNLFTLQPQQSTSFVNMAQLHNRVSASPSRAPAALVSTG 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,137
Number of Sequences: 37544
Number of extensions: 353734
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)