Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1365
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)                  35   0.087
SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           28   10.0 

>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
          Length = 1128

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -3

Query: 249 QSDIQRVFVFIALLCIPVMLLGKPLYL 169
           Q+ IQ + V IA+LC+P MLL KP YL
Sbjct: 653 QAVIQPLLVVIAVLCVPWMLLVKPFYL 679


>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/46 (26%), Positives = 29/46 (63%)
 Frame = -3

Query: 231  VFVFIALLCIPVMLLGKPLYLLATKKNNPKVQVQLTIPVTTGVGPI 94
            VF F+ ++ +P++L+   L   +  +++P++++++ I V   VG I
Sbjct: 1016 VFFFVFVVMVPILLMN--LLPNSMLRDSPRIRIRVVIKVGLAVGDI 1059


>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 187 EQHDG-DAEQRDEHEHA--LDVALSVNMNSLQPSSGTFFENSIMLMNRISTDGAQPWVYA 357
           +Q DG D E+ D+ EH   LD+   ++   ++          + + +RI     Q W  A
Sbjct: 448 DQSDGGDNEEHDQTEHDAFLDLESGIHATGIRSPHRRIRNPRLKVESRIQESWKQKWNPA 507

Query: 358 SSGK 369
           S+GK
Sbjct: 508 STGK 511


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 682 NFKFSVFNHKRPPQRFSSLTAPQ 614
           N K  +F+  RPP R SS  APQ
Sbjct: 521 NLKNELFSRSRPPSRASSPAAPQ 543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,778,721
Number of Sequences: 59808
Number of extensions: 408395
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)