Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1365
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila...    31   0.88 
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...    30   2.0  
At1g70770.1 68414.m08158 expressed protein                             28   8.2  

>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 821

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 249 QSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKVQVQLTIPV 115
           Q  +Q V +F+AL+ +P MLL KP  L   K++  + Q Q   P+
Sbjct: 636 QKTLQLVLLFLALVSVPCMLLPKPFIL--KKQHEARHQGQAYAPL 678


>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 249 QSDIQRVFVFIALLCIPVMLLGKPLYL 169
           Q  +Q  F+F+AL+ +P MLL KP  L
Sbjct: 637 QKIVQLTFLFLALVSVPWMLLPKPFIL 663


>At1g70770.1 68414.m08158 expressed protein
          Length = 610

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = -3

Query: 351 HPRLRSVGADPVHQHDAVLKERPG--GGLQGVHVHAQSDIQR--VFVFIALLCIPVMLLG 184
           H  + ++GA  +   D +L +     GG +G     Q    +  V +F+AL  +      
Sbjct: 225 HRPIEALGAFVLWAFDCILTDLAAQQGGAKGGKKGGQQTTSKSQVAIFVALAMVLRRKPD 284

Query: 183 KPLYLLATKKNNPKVQVQLTIPVT 112
               +L T + NPK Q Q  +PVT
Sbjct: 285 ALTNVLPTLRENPKYQGQDKLPVT 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,511
Number of Sequences: 28952
Number of extensions: 288623
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)