Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1364
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4340| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.97 
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          28   9.0  

>SB_4340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 668 YIYWVLGDRFRKRKFCTYKVVNFGEGGISVAPGRSLTRASAV 543
           +IY  L  +FR+   CT++   F   G  VA  R L  ++AV
Sbjct: 284 FIYGALNPKFRRAFACTFRCRGFDGSGNRVAESRDLQLSTAV 325


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 556 EHQLFLIYCFIAGFCFFLSEIMFFYETIFSFICTNM 449
           + +LF  +    G CFFL +    Y T+ +FI  +M
Sbjct: 372 DQELFFFHELSPGSCFFLPKGAVIYNTLINFIKEHM 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,653,578
Number of Sequences: 59808
Number of extensions: 269455
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)