Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1363
         (441 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   0.74 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   9.1  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 269 MTECISPSGQSVRYHFHFILYSSSELFGXLKNFLXPFSG*FS*RFVKLIFTDCVNSQLYS 90
           +T+C    G + RYHF+  +++S   F    +      G F    V++   D  +++LY 
Sbjct: 152 VTQCPIHPGMTFRYHFN--VHNSGTHFWHSHSGFQRSDGTFGPFIVRVPEEDNPHAKLYD 209

Query: 89  RDCDS 75
            D  S
Sbjct: 210 YDLSS 214


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  DKPVNDAMTIDEFKKLIKNHSPVNK 97
           D P+N  +++DE K +++    V K
Sbjct: 326 DVPINVTLSLDEKKYILQEVVRVKK 350


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 103 LLTQSVKISLTKRQLNHPENGXRKFFKXPNNS 198
           L  + VKI    R++ + +N  R+  +  NN+
Sbjct: 282 LTERQVKIWFQNRRMKNKKNSQRQAAQQQNNN 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,809
Number of Sequences: 336
Number of extensions: 1372
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)