Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1363
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   2.2  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   2.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   3.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.8  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   6.8  

>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  DAMTIDEFKKLIKNHSPVNKV 100
           DAM++D+ KKL KN   V K+
Sbjct: 82  DAMSVDDLKKLNKNKKLVKKL 102


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  DAMTIDEFKKLIKNHSPVNKV 100
           DAM++D+ KKL KN   V K+
Sbjct: 82  DAMSVDDLKKLNKNKKLVKKL 102


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   RVERLRHDKPVNDAMTIDEF 61
           R+E++R D+   DA+TI+EF
Sbjct: 609 RLEKVRLDRSWKDALTINEF 628


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 227 DIERSGRTEICILSYEEDCSRTELIKIVES 316
           DIE+     + +L   EDC R  L  +VE+
Sbjct: 158 DIEKLDEKTVLVLEDVEDCDRRLLSSLVEA 187


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 384 LVQRPDTQHQHDSS*LATTCP 322
           +VQ  D +H+HDSS  + T P
Sbjct: 266 IVQVADEKHEHDSSQYSDTTP 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,716
Number of Sequences: 5004
Number of extensions: 24436
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)