Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1363
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985...    29   1.3  
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266     29   2.2  
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085...    27   5.1  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    27   6.7  
01_01_1194 + 9525196-9525900                                           27   6.7  
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    27   8.8  
03_02_0775 - 11096620-11097240                                         27   8.8  

>06_01_1159 -
           9852316-9852441,9852743-9852838,9852912-9852977,
           9853091-9853180,9853262-9853373,9853515-9853598,
           9853864-9853940,9854823-9854873,9854924-9855031,
           9855703-9855774,9856952-9857011,9857808-9857876,
           9858005-9858088,9858212-9858295,9859106-9859198,
           9859930-9860030,9861155-9861264,9863058-9863104,
           9863693-9863778,9863940-9864012,9864454-9864540,
           9864650-9865301,9866164-9867182,9867702-9867797
          Length = 1180

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 131 KLIFTDCVNSQLYSRDCDSLSVF*IRQ*SWRR*PACRDAG 12
           + I  D VN+ L  R  D L  F I    WR+ P C+ AG
Sbjct: 430 RYIDMDLVNAYLARRSLDYLIGFGISPLLWRKLPGCQSAG 469


>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
          Length = 132

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 320 GGQVVANYDESCWCCVSGRCTSGGACVRAGAA 415
           GG  V   D  C CC      S G+C + GAA
Sbjct: 45  GGWEVKPGDWCCRCCAVNNYASRGSCFKCGAA 76


>04_04_1331 -
           32706043-32707248,32707411-32707652,32707737-32708562,
           32708640-32708863,32708946-32709262,32709381-32709443,
           32709465-32709640,32710609-32710985,32711416-32711470,
           32711614-32711913
          Length = 1261

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 141 SAKSPRKRXKKVLQXAEQFRTGIQDKVEVISNALAGRRY 257
           S KS   R   +   + Q+ TG   ++E+ISNA   R+Y
Sbjct: 638 STKSLSLRSGSLRNLSYQYSTGANGRIEMISNADNDRKY 676


>02_03_0199 +
           16263549-16263644,16264941-16265899,16267140-16267791,
           16267895-16267981,16268253-16268381,16269990-16270036,
           16271337-16271438,16272720-16272843,16272981-16273028,
           16273934-16274026,16274325-16274408,16274536-16274619,
           16274751-16274819,16275531-16275590,16275946-16276017,
           16276957-16277064,16278162-16278238,16278391-16278474,
           16278617-16278728,16278778-16278810,16278811-16278900,
           16279012-16279077,16279163-16279258,16279446-16279497,
           16279723-16279775,16279998-16280018
          Length = 1165

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 131 KLIFTDCVNSQLYSRDCDSLSVF*IRQ*SWRR*PACRDAG 12
           + I  + +N+ L  R  D L  F I    WR+ P C+ AG
Sbjct: 410 RYIDMNLINAYLARRSLDYLIGFGISPLLWRKLPGCQSAG 449


>01_01_1194 + 9525196-9525900
          Length = 234

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 338 NYDESCWCCVSGRCTSGGACVRAGAA 415
           N  +SC  C   RC  GG+C+    A
Sbjct: 57  NNGQSCGACFEVRCGGGGSCLAGTVA 82


>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +2

Query: 254 ICILSYEEDCSRTELIKIVESHGGQVVANYDESC 355
           + I    E C+R  +  + ++H    + N+ E+C
Sbjct: 397 VTIAQIAEGCARVMIKNLEQAHAASAILNFSENC 430


>03_02_0775 - 11096620-11097240
          Length = 206

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = +2

Query: 317 HGGQVVANYDESCWCCVSGR-----CTSGGACVRAGAAXWTCCARA 439
           HGGQ     +   WCC   R     C  GG+ ++   A W  C+ A
Sbjct: 154 HGGQFGGVAEAGVWCCDRRRLREALCRRGGS-LQLPPASWRRCSEA 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,562,682
Number of Sequences: 37544
Number of extensions: 167829
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)