Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1363
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22241| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7) 32 0.18
SB_39510| Best HMM Match : VWA (HMM E-Value=0) 30 0.97
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 0.97
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 1.3
SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035) 29 1.3
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05) 29 1.7
SB_5424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_54946| Best HMM Match : EGF (HMM E-Value=0.02) 28 3.9
SB_786| Best HMM Match : EGF (HMM E-Value=0) 27 9.1
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 27 9.1
>SB_22241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 33.1 bits (72), Expect = 0.10
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACV 400
C+++Y C + + V SHGGQ V + C G+C + GG CV
Sbjct: 191 CVIAYGGQCVISHGGQCVISHGGQCVIAHGGQCVISHGGQCVISHGGQCV 240
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 251 EICILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACV 400
E+C S ++DC + V SHGGQ V ++ C G+C + GG CV
Sbjct: 183 EVC--SLKQDCVIAYGGQCVISHGGQCVISHGGQCVIAHGGQCVISHGGQCV 232
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACVRA 406
C++S+ C + V SHGGQ V ++ C G+C GG C+ A
Sbjct: 207 CVISHGGQCVIAHGGQCVISHGGQCVISHGGQCVVVCVGQCVIAHGGQCIIA 258
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACV 400
C++++ C + V +HGGQ V +Y C G+C + GG CV
Sbjct: 271 CVIAHGGQCVIAHGGQCVIAHGGQCVISYGGQCVISHGGQCVISHGGQCV 320
Score = 32.7 bits (71), Expect = 0.14
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACVRA 406
C++SY C + + V SHGGQ V + C G+C GG C+ A
Sbjct: 295 CVISYGGQCVISHGGQCVISHGGQCVVVHVGQCMIAHVGQCMIAHGGQCMIA 346
Score = 31.5 bits (68), Expect = 0.32
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACVRA 406
C++S+ C + + V +HGGQ + + C G+C GG CV A
Sbjct: 231 CVISHGGQCVVVCVGQCVIAHGGQCIIAHGGQCMISHGGQCVIAHGGQCVIA 282
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACV 400
CI+++ C + + V +HGGQ V + C G+C + GG CV
Sbjct: 255 CIIAHGGQCMISHGGQCVIAHGGQCVIAHGGQCVIAHGGQCVISYGGQCV 304
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACV 400
C++++ C + + SHGGQ V + C G+C GG CV
Sbjct: 247 CVIAHGGQCIIAHGGQCMISHGGQCVIAHGGQCVIAHGGQCVIAHGGQCV 296
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTS--GGACVRA 406
C++++ C K V +GGQ V + C G+C + GG CV A
Sbjct: 375 CVITHGGQCVIDHGGKCVTVYGGQCVITHGCQCVIVYGGQCVTVYGGQCVIA 426
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTS--GGACV 400
C++ + C + + +HGGQ V + C G+C + GG CV
Sbjct: 351 CVIVHVGQCVIVHVGQCEVAHGGQCVITHGGQCVIDHGGKCVTVYGGQCV 400
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACV 400
C++ + C + V +HGGQ V ++ C G+C T G CV
Sbjct: 359 CVIVHVGQCEVAHGGQCVITHGGQCVIDHGGKCVTVYGGQCVITHGCQCV 408
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTS 385
C+ Y C T + V +GGQ V Y C G+C +
Sbjct: 391 CVTVYGGQCVITHGCQCVIVYGGQCVTVYGGQCVIAHGGQCVT 433
>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
Length = 117
Score = 32.3 bits (70), Expect = 0.18
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 CILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACVRA 406
C++++ + C+ + + +HGGQ V + C G+C T GG C+ A
Sbjct: 39 CMIAHGDRCTVSHSGRCTVAHGGQCVIVHGSQCVIAHGGQCAITLGGQCMIA 90
Score = 30.3 bits (65), Expect = 0.74
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 317 HGGQVVANYDESCWCCVSGRCT--SGGACV 400
HGGQ + + + C SGRCT GG CV
Sbjct: 35 HGGQCMIAHGDRCTVSHSGRCTVAHGGQCV 64
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 230 IERSGRTEICILSYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRC--TSGGACVR 403
+ SGR C +++ C + V +HGGQ C G+C GG CV
Sbjct: 49 VSHSGR---CTVAHGGQCVIVHGSQCVIAHGGQCAITLGGQCMIAHGGQCMIAYGGQCVT 105
Query: 404 A 406
A
Sbjct: 106 A 106
>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
Length = 705
Score = 29.9 bits (64), Expect = 0.97
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 272 EEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
+ED T LI+ +E +++ C C +GG C+ +G + +TC
Sbjct: 272 KEDHLFTPLIEDLEPMLPEILGEVLADIEPCTKNPCQNGGTCIPSGPSVYTC 323
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.9 bits (64), Expect = 0.97
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 272 EEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
+ED T LI+ +E +++ C C +GG C+ +G + +TC
Sbjct: 4372 KEDHLFTPLIEDLEPMLPEILGEVLADIEPCTKNPCQNGGTCIPSGPSVYTC 4423
Score = 29.9 bits (64), Expect = 0.97
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 272 EEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
+ED T LI+ +E +++ C C +GG C+ +G + +TC
Sbjct: 4961 KEDHLFTPLIEDLEPMLPEILGEVLADIEPCTKNPCLNGGTCIPSGPSVYTC 5012
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 362 CVSGRCTSGGACVRAGAAXWTC 427
C S C +GG C A A ++C
Sbjct: 1308 CSSNPCQNGGTCTEAAAGRYSC 1329
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 0.97
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 230 IERSGRTEICILSYEEDCSRTELIKIVESHGGQVVANYDESCWC----CVSGRCTSGGAC 397
+ S R + C + ++ + L+K +E+ +ANY C C S C GG C
Sbjct: 2507 VSNSNRAKKCNI-FDIQAFKAALVKAIEAK--VTIANYTAERMCEANPCNSNPCMHGGVC 2563
Query: 398 VRAGAAXWTC 427
+ +TC
Sbjct: 2564 ELHSSVRYTC 2573
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 327 CPP*DSTILISSVRLQSSSYDRMHISVRPERSISLPLYLVFQ 202
CP ++ L S + +S D M SV PER S+P L F+
Sbjct: 325 CPRKMNSTLARSAHVNASFKDEMENSVAPERFQSIPGQLTFE 366
>SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)
Length = 396
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 266 SYEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSGGACV 400
SY+ + E++K+ E++ + + S CC+ RC +GG CV
Sbjct: 106 SYKYYDLKQEIVKVWETYSSHMSSC---SNGCCLGQRCLNGGTCV 147
>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
Length = 241
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 329 VVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
VV DE C C +GG+CV AGA + C
Sbjct: 153 VVPTKDE---CFTGNPCKNGGSCVTAGANAYNC 182
>SB_5424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 323 GQVVANYDESCWCCVSGRCTSG 388
G +++ D S WCCV GR G
Sbjct: 527 GYSISDDDASLWCCVDGRQAGG 548
>SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)
Length = 206
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 359 CCVSGRCTSGGACV 400
CCV RC +GG CV
Sbjct: 8 CCVGQRCLNGGTCV 21
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 317 HGGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTCCAR 436
H G V N DE+ CV C +GG C + C R
Sbjct: 261 HSGFVGKNCDENY--CVPNPCLNGGICKSVADKGYQCKCR 298
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 362 CVSGRCTSGGACV 400
CVS CT+GG CV
Sbjct: 1108 CVSNSCTNGGTCV 1120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,340
Number of Sequences: 59808
Number of extensions: 196641
Number of successful extensions: 658
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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