Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1363
         (441 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060349-1|AAL25388.1|  307|Drosophila melanogaster GH27263p pro...    29   2.1  
AE014134-1024|ABC65878.1|  307|Drosophila melanogaster CG9109-PB...    29   2.1  
AE014134-1023|AAF52326.3|  535|Drosophila melanogaster CG9109-PA...    29   2.1  
DQ991915-1|ABJ09588.1| 2176|Drosophila melanogaster eyes shut pr...    28   4.9  
DQ780942-1|ABH07112.1| 2165|Drosophila melanogaster spacemaker p...    28   4.9  
BT003443-1|AAO39446.1|  198|Drosophila melanogaster RH63179p pro...    27   8.6  
AF119710-1|AAD22044.1|  262|Drosophila melanogaster RAD201 protein.    27   8.6  
AE013599-814|AAF58972.1|  180|Drosophila melanogaster CG8016-PA ...    27   8.6  

>AY060349-1|AAL25388.1|  307|Drosophila melanogaster GH27263p
           protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 287 GCSLLRMTECISPSGQSVRYHFHFILYSSSEL 192
           G  L R+ + ++PSGQ++  H  F + +S EL
Sbjct: 172 GALLRRLADLVAPSGQNITVHSDFSIDASHEL 203


>AE014134-1024|ABC65878.1|  307|Drosophila melanogaster CG9109-PB,
           isoform B protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 287 GCSLLRMTECISPSGQSVRYHFHFILYSSSEL 192
           G  L R+ + ++PSGQ++  H  F + +S EL
Sbjct: 172 GALLRRLADLVAPSGQNITVHSDFSIDASHEL 203


>AE014134-1023|AAF52326.3|  535|Drosophila melanogaster CG9109-PA,
           isoform A protein.
          Length = 535

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 287 GCSLLRMTECISPSGQSVRYHFHFILYSSSEL 192
           G  L R+ + ++PSGQ++  H  F + +S EL
Sbjct: 172 GALLRRLADLVAPSGQNITVHSDFSIDASHEL 203


>DQ991915-1|ABJ09588.1| 2176|Drosophila melanogaster eyes shut
           protein.
          Length = 2176

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 320 GGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
           G Q   N+DE CW   S  C +GG CV  G A + C
Sbjct: 176 GIQCQTNWDE-CW---SSPCQNGGTCV-DGVAYYNC 206


>DQ780942-1|ABH07112.1| 2165|Drosophila melanogaster spacemaker
           protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 320 GGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTC 427
           G Q   N+DE CW   S  C +GG CV  G A + C
Sbjct: 165 GIQCQTNWDE-CW---SSPCQNGGTCV-DGVAYYNC 195


>BT003443-1|AAO39446.1|  198|Drosophila melanogaster RH63179p
           protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 IKIVESHGGQVVANYDESCWCCVSGRCTSGGAC 397
           +K+V++   Q + N  + CW    GRC  G +C
Sbjct: 97  VKMVDNDAHQKLKNGRKICWNFRRGRCRFGTSC 129


>AF119710-1|AAD22044.1|  262|Drosophila melanogaster RAD201 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 IKIVESHGGQVVANYDESCWCCVSGRCTSGGAC 397
           +K+V++   Q + N  + CW    GRC  G +C
Sbjct: 79  VKMVDNDAHQKLKNGRKICWNFRRGRCRFGTSC 111


>AE013599-814|AAF58972.1|  180|Drosophila melanogaster CG8016-PA
           protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 IKIVESHGGQVVANYDESCWCCVSGRCTSGGAC 397
           +K+V++   Q + N  + CW    GRC  G +C
Sbjct: 79  VKMVDNDAHQKLKNGRKICWNFRRGRCRFGTSC 111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,521
Number of Sequences: 53049
Number of extensions: 281064
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)