Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1363
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 28 2.6
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 28 2.6
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 27 4.6
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 27 4.6
U41749-3|AAB52485.2| 120|Caenorhabditis elegans Hypothetical pr... 27 4.6
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 27 4.6
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 27 4.6
Z82056-4|CAJ85765.1| 108|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 8.0
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 103 LLTQSVKISLTKR-QLNHPENGXRKFFKXPNNSELEYKIKW 222
+L QSV IS+T HP + F+ P+ S E + W
Sbjct: 519 VLNQSVPISITSNGPSRHPSSSSLTTFRKPSTSNRERGVSW 559
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 103 LLTQSVKISLTKR-QLNHPENGXRKFFKXPNNSELEYKIKW 222
+L QSV IS+T HP + F+ P+ S E + W
Sbjct: 519 VLNQSVPISITSNGPSRHPSSSSLTTFRKPSTSNRERGVSW 559
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 211 KIKWK*YRTLWPDGDMHSVIRRRL 282
K KWK T+W GD ++ IR+ +
Sbjct: 642 KAKWKEATTIWESGDCNTYIRQSM 665
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 211 KIKWK*YRTLWPDGDMHSVIRRRL 282
K KWK T+W GD ++ IR+ +
Sbjct: 642 KAKWKEATTIWESGDCNTYIRQSM 665
>U41749-3|AAB52485.2| 120|Caenorhabditis elegans Hypothetical
protein F09E10.6 protein.
Length = 120
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 278 DCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSGGACVRAGAAXWTCCA 433
DC+ TE + S+G +Y+ + + C G C G R CC+
Sbjct: 40 DCNGTEFCLKLPSNGHVGRRHYEGAQYSCDFGECRREGCNKRDSGGTICCCS 91
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 211 KIKWK*YRTLWPDGDMHSVIRRRL 282
K KWK T+W GD ++ IR+ +
Sbjct: 642 KAKWKEATTIWESGDCNTYIRQSM 665
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 96 KLAVNAISEDQLNKTSAKSPRKRXKKVLQXAEQFRTGIQDKVEVISNALAGRR 254
K +++ SED+ + S+K K+ KK +Q ++ VEV N+ + ++
Sbjct: 303 KAVIDSSSEDEEEEKSSKKRSKKSKKESDEEQQASDSEEEVVEVKKNSKSPKK 355
>Z82056-4|CAJ85765.1| 108|Caenorhabditis elegans Hypothetical
protein T26H5.10 protein.
Length = 108
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 64 KTDKESQSRE*SWLLTQSVKISLTKRQLNHPENGXRKFFKXPNNSELEYKIKW 222
KT + E +L T ++ KR+ N + K P+N+++ + +KW
Sbjct: 4 KTVQSKDKDEIGYLFTGYFSLNDCKREYNQSQV-IEKLMSLPSNNKIAFNVKW 55
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 26.6 bits (56), Expect = 8.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 362 CVSGRCTSGGACVRAGAAXWTC 427
C +C++GG C+ + A +TC
Sbjct: 77 CDPNKCSNGGTCIPSFGAKFTC 98
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 26.6 bits (56), Expect = 8.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 362 CVSGRCTSGGACVRAGAAXWTC 427
C +C++GG C+ + A +TC
Sbjct: 77 CDPNKCSNGGTCIPSFGAKFTC 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,055,883
Number of Sequences: 27780
Number of extensions: 145070
Number of successful extensions: 478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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